Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_022755.1 Length=10692 Score E Sequences producing significant alignments: (Bits) Value seq40 122 6e-24 seq18 113 3e-21 >seq40 Length=949583 Score = 122 bits (134), Expect = 6e-24 Identities = 362/551 (66%), Gaps = 7/551 (1%) Strand=Plus/Plus Query 5992 TTCTTCTCTCTAATGTCTTGGAAATTAAGAGAATACTTCGTGATAACAGAGTATCTCATA 6051 ||||| ||||||||| |||| | ||||||| || || || || || |||||| | || Sbjct 1665 TTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTATTTAATT 1724 Query 6052 AAGACTCATTTTGTTCCTTTGTTTCACGGGCTCACCATGGCGGACGACCTGACAGCTGTT 6111 || |||| |||||| | || | ||| | || ||||| || || | ||| || | Sbjct 1725 AAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAACAACTTTG 1784 Query 6112 ATGAAGAAAATGATGGAGTCATCTTCAGGACAAGGCGCCTCCGACTATGATGCCATTGCC 6171 | |||||| || |||| | || ||||| ||||| | ||||| | ||| | Sbjct 1785 ACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGATCATCTCT 1844 Query 6172 ATTGCGAACCATATTGACTATGAAAAATGGAATAACCATCAACGGAAAGAATCCAATGGT 6231 || || || |||| || ||||||||||||||| ||||||| | || | || | | Sbjct 1845 ATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAG-AGGGAACGAT 1903 Query 6232 CCTGTCTTCAGAGTCATGGGTCAGTTCCTAGGGTATCCAAATTTAATTTACCGGACGCAT 6291 ||| | || | ||| ||||| | || |||| | ||||| ||||| | |||||| Sbjct 1904 CCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTAAGAACGCAT 1963 Query 6292 GAGTTTTTTGAGAATAGCCTCATATATTACAATAACAGACCCGAC--CTGATGAGAGTGG 6349 || || ||| | || | | | ||||| ||| | ||||| ||| | |||| || Sbjct 1964 GAATTCTTTAATAAAATTATATTCTATTATAATCAAAGACCTGACTTTTAATGATTGTTC 2023 Query 6350 TGAATAATACCGTGGAGAACAGTTCTGATCAAAGAGTCTGCTGGAATGGTCAG-GCAGGG 6408 ||| | | || || | | || | || ||||||||||||||| | |||| Sbjct 2024 GAAATGGTCGAATTGAAAATTCTACACGGCATATCGTATGCTGGAATGGTCAGTGTAGGG 2083 Query 6409 GGGCTCGAAGGACTGCGGCAAAAAGGATGGAGTATATTAAATTTGCTGGTGATAGCTAGG 6468 || | ||||| | ||||| ||||||| | | | ||| ||| |||| ||| Sbjct 2084 GGCCAAGAAGGGATTAGGCAACGAGGATGGTGCGTGGTCAATGCATTGGCAATAGAAAGG 2143 Query 6469 GAATCTC-AGATTAGAAACACCTCTGTCAAAACTCTGGCACAGGGGGACAATCAGGTGAT 6527 ||| || |||| || |||||| || | | ||||||| ||||| || ||||| || Sbjct 2144 GAAAGTCAAGATCAG-AACACCAAAGTAAGCCTTTTGGCACAAGGGGATAACCAGGTTAT 2202 Query 6528 TTGCACTCAAT 6538 || || |||| Sbjct 2203 ATGTAC-CAAT 2212 >seq18 Length=5623067 Score = 113 bits (124), Expect = 3e-21 Identities = 282/419 (67%), Gaps = 11/419 (3%) Strand=Plus/Minus Query 5990 GGTTCTTCTCTCTAATGTCTTGGAAATTAAGAGAATACTTCGTGATAACAGAGTATCTCA 6049 ||||||||||||| ||| |||| ||||||| || || |||||||| || || || | Sbjct 2777390 GGTTCTTCTCTCTCATGAGCTGGAGGCTAAGAGAGTATTTTGTGATAACCGAATACCTGA 2777331 Query 6050 TAAAGACTCATTTTGTTCCTTTGTTTCACGGGCTCACCATGGCGGACGACCTGACAGCTG 6109 |||| || ||||| || || || | || |||||||||| || ||| | || | Sbjct 2777330 TAAAATTGCACTTTGTGCCATTATTCAAGGGAATCACCATGGCAGATGACTTAACTACAC 2777271 Query 6110 TTATGAAGAAAATGATGGAGTCATCTTCAGGACAAGGCGCCTCCGACTAT-GATGCCATT 6168 | || ||||| | | || |||| || ||||||| | || ||| | | ||| Sbjct 2777270 TCATAAAGAAGCTTTTAGATACATCCTCGGGACAAGCTTTGACGGATTATCGGAGTTATT 2777211 Query 6169 GCCATTGCGAACCATATTGACTATGAAAAATGGAATAACCATCAACGGAAAGAATCCAAT 6228 | || || || ||||| || ||||||||||||||| || ||||| | | ||| Sbjct 2777210 TCTATAGCTAATCATATAGATTATGAAAAATGGAATGCTCACCAACGAGGAACAGGGAAT 2777151 Query 6229 GGTCC-TGTCTTCAGAGTCATGGGTCAGTTCCTAGGGTATCCAAATTTAATTTACCGGAC 6287 | ||| ||| |||| ||||||||||| || |||| || || | ||| | | || Sbjct 2777150 GATCCATGT-TTCAAGGTCATGGGTCAATTTTTAGGTCTGCCCAACTCAATACTCAGAAC 2777092 Query 6288 GCATGAGTTTTTT--GAGAATAGCCTCATATATTACAATAACAGACCCGACCTGATGAGA 6345 |||| |||||| | ||| | | | ||||| ||| | |||| |||| ||| || Sbjct 2777091 TAATGAATTTTTTAGTAAAATTACTT--TTTATTATAATCAACGACCAGACCCGATATGA 2777034 Query 6346 GTGGTGAATAATACCGT-GGAGAACAGTT--CTGATCAAAGAGTCTGCTGGAATGGTCA 6401 | |||||||| || |||| | || | ||||| ||||| || |||||||| || Sbjct 2777033 -TTATGAATAATGGTGTCATAGAAAATTTGACAGATCAGAGAGTATGTTGGAATGGACA 2776976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34098257455488