Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_024473.1 Length=11123 Score E Sequences producing significant alignments: (Bits) Value seq40 170 1e-38 seq18 80.6 2e-11 >seq40 Length=949583 Score = 170 bits (188), Expect = 1e-38 Identities = 382/560 (68%), Gaps = 13/560 (2%) Strand=Plus/Plus Query 6247 GGGAGATTCTTCTCATTGATGTCATGGAGATTAAGGGAATATTTTGTGATCACGGAGTAC 6306 || |||||||| || | ||| ||| || |||| || |||||||| || |||||||| Sbjct 1659 GGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTAT 1718 Query 6307 TTAATCAAAACATACTACGTTCCCTTGTTTAAGGGGTTAACTATGGCAGATGACCTCACA 6366 ||||| ||| | | || |||||| | || || ||| | || ||||||||||| | ||| Sbjct 1719 TTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAACA 1778 Query 6367 TCGGTGATTAAGAAGATGATGGACAGTTCATCAGGTCAAGGGCTCGATGATTA-TTCATC 6425 | ||| ||||| || |||| | ||||||||||||||| || | ||| || ||| Sbjct 1779 ACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGATC 1838 Query 6426 AGTTTGTTTGGCTAACCATATTGACTACGAGAAGTGGAATAACCATCAAAGAAAGGA-AT 6484 | | | | | ||||| |||| || || || || |||||| ||||||||| |||| | Sbjct 1839 A-TCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAG--AGGAGAG 1895 Query 6485 CTAATGGTCCCATCTTCAGAGTCATGGGACAGTTTCTGGGTTATCCATCACTCATAGAGA 6544 || | ||| | || | ||| ||||| | ||| | || | ||| | || | | Sbjct 1896 GGAACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTAA 1955 Query 6545 GAACTCATGAATTTTTTGAGAAAAGCTTAATTTATTACAATGGGCGTCCTGA--TCTAAT 6602 |||| |||||||| ||| | |||| || | ||||| ||| | ||||| | |||| Sbjct 1956 GAACGCATGAATTCTTTAATAAAATTATATTCTATTATAATCAAAGACCTGACTTTTAAT 2015 Query 6603 GACCGTTCGAAATGG-CACATTGTGTAATTCCACTAAGCACCGGGTTTGTTGGAATGGGC 6661 || ||||||||||| | |||| ||||| || ||| || || |||||||| | Sbjct 2016 GATTGTTCGAAATGGTCGAATTG-AAAATTCTACACGGCATATCGTATGCTGGAATGGTC 2074 Query 6662 A-AAAAGGAGGTTTGGAAGGACTAAGACAAAAGGGATGGAGTATTGTGAATCTCTTGGTT 6720 | ||| || ||||| | || ||| |||||| | | || ||| |||| Sbjct 2075 AGTGTAGGGGGCCAAGAAGGGATTAGGCAACGAGGATGGTGCGTGGTCAATGCATTGGCA 2134 Query 6721 ATTCAAAGGG-AAGCCAAAATTCGAAACACAGCAGTGAAGGTCTTAGCACAGGGAGATAA 6779 || |||||| ||| ||| | || ||||| ||| | | || ||||| || ||||| Sbjct 2135 ATAGAAAGGGAAAGTCAAGA-TCAGAACACCAAAGTAAGCCTTTTGGCACAAGGGGATAA 2193 Query 6780 TCAGGTTATATGCACTCAAT 6799 ||||||||||| || |||| Sbjct 2194 CCAGGTTATATGTAC-CAAT 2212 >seq18 Length=5623067 Score = 80.6 bits (88), Expect = 2e-11 Identities = 228/340 (67%), Gaps = 13/340 (4%) Strand=Plus/Minus Query 6253 TTCTTCTCATTGATGTCATGGAGATTAAGGGAATATTTTGTGATCACGGAGTACTTAATC 6312 |||||||| | ||| ||||| |||| || ||||||||||| || || ||| | || Sbjct 2777388 TTCTTCTCTCTCATGAGCTGGAGGCTAAGAGAGTATTTTGTGATAACCGAATACCTGATA 2777329 Query 6313 AAAACATACTACGTTCCCTTGTTTAAGGGGTTAACTATGGCAGATGACCTCACATCGGTG 6372 ||| ||| || || || || ||||| | || |||||||||||| | || | | Sbjct 2777328 AAATTGCACTTTGTGCCATTATTCAAGGGAATCACCATGGCAGATGACTTAACTACACTC 2777269 Query 6373 ATTAAGAAGATGATGGACAGTTCATCAGGTCAAGGGCTCGATGATTAT-TCATCAGTTTG 6431 || |||||| | | || | || || || |||| | |||||| | ||| Sbjct 2777268 ATAAAGAAGCTTTTAGATACATCCTCGGGACAAGCTTTGACGGATTATCGGAGTTATTTC 2777209 Query 6432 TTTGGCTAACCATATTGACTACGAGAAGTGGAATAACCATCAAAGAAAGGA--ATCTAAT 6489 | | ||||| ||||| || || || || |||||| || ||| | |||| | ||| Sbjct 2777208 TATAGCTAATCATATAGATTATGAAAAATGGAATGCTCACCAACG--AGGAACAGGGAAT 2777151 Query 6490 GGTCCCATCTTCAGAGTCATGGGACAGTTTCTGGGT-TATCCATCACTC-ATAGAGAGAA 6547 | ||| |||| |||||||| || ||| | ||| | ||| |||| ||| |||| Sbjct 2777150 GATCCATGTTTCAAGGTCATGGGTCAATTTTTAGGTCTGCCCA--ACTCAATACTCAGAA 2777093 Query 6548 CTCATGAATTTTTTGAGAAAAGCTTA--ATTTATTACAAT 6585 || ||||||||||| || ||| ||| ||||||| ||| Sbjct 2777092 CTAATGAATTTTTT-AGTAAA-ATTACTTTTTATTATAAT 2777055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35477419332676