Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_025255.1 Length=11135 Score E Sequences producing significant alignments: (Bits) Value seq40 154 1e-33 seq18 140 2e-29 >seq40 Length=949583 Score = 154 bits (170), Expect = 1e-33 Identities = 245/350 (70%), Gaps = 1/350 (0%) Strand=Plus/Plus Query 6309 GGAAGATTCTTTTCTTTGATGTCCTGGAAGCTCAGAGAGTATTTTGTCATCACTGAGTAT 6368 ||||||||||||||| | ||| ||| || |||||||||||||| || || |||||| Sbjct 1659 GGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTAT 1718 Query 6369 TTGATTAAGACGCACTTTGTCCCGATGTTTAAAGGGTTGACCATGGCGGATGACTTGACA 6428 || ||||| || | ||| || | || |||||| | || ||||| ||||| || ||| Sbjct 1719 TTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAACA 1778 Query 6429 GCGGTGATAAAGAAGATGATGGACACATCTTCAGGACAAGGCTTAGATAATTATGAATCC 6488 | ||| |||||| || |||| || || ||||| ||||| | | | | || | | Sbjct 1779 ACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGATC 1838 Query 6489 ATTTGTATAGCCAACCATATTGACTATGAGAAGTGGAACAATCATCAAAGAAAAGAGTCG 6548 || | |||||| || |||| || ||||| || ||||| ||||||||| |||| | Sbjct 1839 ATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAGAG-GG 1897 Query 6549 AACGGGCCCGTGTTCAAGGTGATGGGTCAATTCTTGGGATATCCACGTCTGATTGAGAGA 6608 |||| || | || || |||||||| |||| || |||| ||| | || | ||| Sbjct 1898 AACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTAAGA 1957 Query 6609 ACTCATGAATTTTTTGAGAAGAGTCTGATATATTACAATGGACGACCAGA 6658 || |||||||| ||| | || | | | | ||||| ||| | |||| || Sbjct 1958 ACGCATGAATTCTTTAATAAAATTATATTCTATTATAATCAAAGACCTGA 2007 >seq18 Length=5623067 Score = 140 bits (154), Expect = 2e-29 Identities = 249/354 (70%), Gaps = 7/354 (2%) Strand=Plus/Minus Query 6315 TTCTTTTCTTTGATGTCCTGGAAGCTCAGAGAGTATTTTGTCATCACTGAGTATTTGATT 6374 ||||| ||| | ||| ||||| ||| |||||||||||||| || || || || |||| Sbjct 2777388 TTCTTCTCTCTCATGAGCTGGAGGCTAAGAGAGTATTTTGTGATAACCGAATACCTGATA 2777329 Query 6375 AAGACGCACTTTGTCCCGATGTTTAAAGGGTTGACCATGGCGGATGACTTGACAGCGGTG 6434 || ||||||||| || | || || || | |||||||| |||||||| || | | Sbjct 2777328 AAATTGCACTTTGTGCCATTATTCAAGGGAATCACCATGGCAGATGACTTAACTACACTC 2777269 Query 6435 ATAAAGAAGATGATGGACACATCTTCAGGACAAGGCTTAGA-TAATTAT-GAATCCATTT 6492 ||||||||| | | || ||||| || |||||| |||| || ||||| | | |||| Sbjct 2777268 ATAAAGAAGCTTTTAGATACATCCTCGGGACAA-GCTTTGACGGATTATCGGAGTTATTT 2777210 Query 6493 GTATAGCCAACCATATTGACTATGAGAAGTGGAACAATCATCAAAGA-AAAGAGTCGAAC 6551 |||||| || ||||| || ||||| || ||||| ||| ||| || || || ||| Sbjct 2777209 CTATAGCTAATCATATAGATTATGAAAAATGGAATGCTCACCAACGAGGAACAG-GGAAT 2777151 Query 6552 GGGCCCGTGTTCAAGGTGATGGGTCAATTCTT-GGGATATCCACGTCTGATTGAGAGAAC 6610 | || |||||||| ||||||||||| || || | ||| || || ||||| Sbjct 2777150 GATCCATGTTTCAAGGTCATGGGTCAATTTTTAGGTCTGCCCAACTC-AATACTCAGAAC 2777092 Query 6611 TCATGAATTTTTTGAGAAGAGTCTGATATATTACAATGGACGACCAGATCTGAT 6664 | ||||||||||| || | | | ||||| ||| ||||||||| | ||| Sbjct 2777091 TAATGAATTTTTTAGTAAAATTACTTTTTATTATAATCAACGACCAGACCCGAT 2777038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35515818271252