Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_025342.1 Length=11120 Score E Sequences producing significant alignments: (Bits) Value seq40 123 2e-24 >seq40 Length=949583 Score = 123 bits (136), Expect = 2e-24 Identities = 242/354 (68%), Gaps = 3/354 (1%) Strand=Plus/Plus Query 6288 GGACGATTCTTCTCTTTGATGTCTTGGAGATTGAGGGAATATTTCGTTGTTACAGAATAT 6347 ||| ||||||| ||| | ||| |||| || | || || ||||| || |||| || ||| Sbjct 1659 GGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTAT 1718 Query 6348 CTTATAAAGGAGCATTTCGTCCCATTATTCAATGGGTTGACAATGGCAGATGACATGACG 6407 | || || | |||| || || | ||||| ||| | |||||||||||||| | || Sbjct 1719 TTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAACA 1778 Query 6408 ACAGTGATATCGAAATTGATGGACAGAACCCAAGGTCAGGGCGGAGAGGACTACACACAA 6467 || ||| | ||||||| |||| | | |||||| || | |||||| Sbjct 1779 ACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGATC 1838 Query 6468 ATCTGCATCGCCAATCACATTGACTATGAAAAATGGAACAATCATCAAAGAAAGGACGCC 6527 |||| || || ||| | || || |||||||||||||| ||||||||| || | Sbjct 1839 ATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAGA-GGG 1897 Query 6528 ACCGGCCCTGTCTTTAAGGTCATGGGACAGTTCTTGGGATTACCAAATTTAATCTATCGA 6587 | || ||| | ||||| || ||||| | || || ||||| ||||| |||||| || Sbjct 1898 AACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTAAGA 1957 Query 6588 ACACATGAGTTCTTTGAACAGAGCTGGATT-TATTATAATGGTAGGCCTGATTT 6640 || ||||| |||||| || | | | ||| ||||||||| || ||||| || Sbjct 1958 ACGCATGAATTCTTT-AATAAAATTATATTCTATTATAATCAAAGACCTGACTT 2010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35467819598032