Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_025353.1 Length=11070 Score E Sequences producing significant alignments: (Bits) Value seq40 172 4e-39 seq18 111 1e-20 >seq40 Length=949583 Score = 172 bits (190), Expect = 4e-39 Identities = 247/343 (72%), Gaps = 9/343 (3%) Strand=Plus/Plus Query 6282 GGCAGAtttttttCTCTTATGTCCTGGAAGTTGAGAGAATATTTCGTCATTACGGAGTAT 6341 || ||||| |||||||| ||| ||| | ||||| ||||| || |||||||||||| Sbjct 1659 GGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTAT 1718 Query 6342 TTAATAAAGACACATTTTG-TCCCCATGTTTAAGGGATTGACAATGGCAGATGATCTAAC 6400 ||||| || ||||| || ||||| | | |||||||| ||||||||||||||| |||| Sbjct 1719 TTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATT-ACAATGGCAGATGATTTAAC 1777 Query 6401 AGCTGTCATAAAGAAAATGATGGATACCTCATCAGGACAGGGTTTGGATAATTACGACTC 6460 | || | | ||||||| || ||||||| |||||||| || ||| ||| | | |||| Sbjct 1778 AACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGAT 1837 Query 6461 AATTTGCATAGCCAATCACATTGATTATGAGAAGTGGAA---CAATCACCAGCGGAAAGA 6517 || | ||||| ||| | || |||||||| || ||||| | |||| || ||| || Sbjct 1838 CATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCA-AAGAGGAGAG- 1895 Query 6518 ATCCAATGGTCCTGTTTTTAGGGTAATGGGACAATTCCTTGGCTACCCCAATTTGATTGA 6577 || | |||| |||||| || ||||| |||| | || | || || || || | Sbjct 1896 --GGAACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGT 1953 Query 6578 ACGCACCCATGAATTCTTTGAAAAAAGTCTGATTTACTATAAT 6620 | | || |||||||||||| | |||| | | | || |||||| Sbjct 1954 AAGAACGCATGAATTCTTTAATAAAATTATATTCTATTATAAT 1996 >seq18 Length=5623067 Score = 111 bits (122), Expect = 1e-20 Identities = 236/351 (67%), Gaps = 1/351 (0%) Strand=Plus/Minus Query 6288 tttttttCTCTTATGTCCTGGAAGTTGAGAGAATATTTCGTCATTACGGAGTATTTAATA 6347 || || ||||| ||| ||||| | | ||||| ||||| || || || || || | ||| Sbjct 2777388 TTCTTCTCTCTCATGAGCTGGAGGCTAAGAGAGTATTTTGTGATAACCGAATACCTGATA 2777329 Query 6348 AAGACACATTTTGTCCCCATGTTTAAGGGATTGACAATGGCAGATGATCTAACAGCTGTC 6407 || || ||||| || | || |||||| | || ||||||||||| |||| | || Sbjct 2777328 AAATTGCACTTTGTGCCATTATTCAAGGGAATCACCATGGCAGATGACTTAACTACACTC 2777269 Query 6408 ATAAAGAAAATGATGGATACCTCATCAGGACAGGGTTTGGATAATTA-CGACTCAATTTG 6466 |||||||| | | ||||| || || ||||| | |||| |||| || |||| Sbjct 2777268 ATAAAGAAGCTTTTAGATACATCCTCGGGACAAGCTTTGACGGATTATCGGAGTTATTTC 2777209 Query 6467 CATAGCCAATCACATTGATTATGAGAAGTGGAACAATCACCAGCGGAAAGAATCCAATGG 6526 ||||| ||||| || |||||||| || ||||| |||||| || | | |||| Sbjct 2777208 TATAGCTAATCATATAGATTATGAAAAATGGAATGCTCACCAACGAGGAACAGGGAATGA 2777149 Query 6527 TCCTGTTTTTAGGGTAATGGGACAATTCCTTGGCTACCCCAATTTGATTGAACGCACCCA 6586 ||| ||| | ||| ||||| ||||| | || ||||| | || | || | Sbjct 2777148 TCCATGTTTCAAGGTCATGGGTCAATTTTTAGGTCTGCCCAACTCAATACTCAGAACTAA 2777089 Query 6587 TGAATTCTTTGAAAAAAGTCTGATTTACTATAATGGACGTCCAGACCTGAT 6637 |||||| ||| |||| | |||| |||||| ||| ||||||| ||| Sbjct 2777088 TGAATTTTTTAGTAAAATTACTTTTTATTATAATCAACGACCAGACCCGAT 2777038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35307824020632