Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_025356.1 Length=11097 Score E Sequences producing significant alignments: (Bits) Value seq40 113 3e-21 seq18 93.3 3e-15 >seq40 Length=949583 Score = 113 bits (124), Expect = 3e-21 Identities = 217/316 (69%), Gaps = 3/316 (1%) Strand=Plus/Plus Query 6343 GGAAGATTCTTTTCCCTGATGTCCTGGCAACTGAGAGAATATTTTGTCATCACCGAGTAC 6402 |||||||||||||| || ||| |||| ||| ||||| |||||||| || || ||||| Sbjct 1659 GGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTAT 1718 Query 6403 TTAATAAAGACTCATTATGTACCATTATTCAAAGGACTCACAATGGCGGATGATCTGACA 6462 ||||| || |||||||| || | |||||||| | |||||||| |||||| | ||| Sbjct 1719 TTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAACA 1778 Query 6463 TCAGTTGTAAAGAAGATGTTGGACAACACGAATGGACAAGGACTGGATGATTA-TTCATC 6521 | | |||||| || |||| | | || ||||| |||| ||| || ||| Sbjct 1779 ACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGATC 1838 Query 6522 GATTTGCATCGCCAATCACATCGACTATGAGAAGTGGAATAATCATCAGAGAAAAGAATC 6581 || | || || ||| | || || ||||| || |||||| ||||| ||| || | Sbjct 1839 -ATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAG-AGG 1896 Query 6582 CAATGGGCCTGTGTTTCGAGTCATGGGGCAGTTTTTGGGTTATCCCAGATTGTTTGAAAG 6641 || | ||| | ||| ||| ||||| | ||||| || | || | || | | ||| Sbjct 1897 GAACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTAAG 1956 Query 6642 AACCCATGAGTTTTTT 6657 ||| ||||| || ||| Sbjct 1957 AACGCATGAATTCTTT 1972 >seq18 Length=5623067 Score = 93.3 bits (102), Expect = 3e-15 Identities = 188/275 (68%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 6349 TTCTTTTCCCTGATGTCCTGGCAACTGAGAGAATATTTTGTCATCACCGAGTACTTAATA 6408 ||||| || || ||| |||| || ||||| |||||||| || ||||| ||| | ||| Sbjct 2777388 TTCTTCTCTCTCATGAGCTGGAGGCTAAGAGAGTATTTTGTGATAACCGAATACCTGATA 2777329 Query 6409 AAGACTCATTATGTACCATTATTCAAAGGACTCACAATGGCGGATGATCTGACATCAGTT 6468 || || | ||| ||||||||||| ||| |||| ||||| ||||| | || || | Sbjct 2777328 AAATTGCACTTTGTGCCATTATTCAAGGGAATCACCATGGCAGATGACTTAACTACACTC 2777269 Query 6469 GTAAAGAAGATGTTGGACAACACGAATGGACAAGGACTGGATGATTAT-TCATCGATTTG 6527 |||||||| | || || | | ||||||| || |||||| | |||| Sbjct 2777268 ATAAAGAAGCTTTTAGATACATCCTCGGGACAAGCTTTGACGGATTATCGGAGTTATTTC 2777209 Query 6528 CATCGCCAATCACATCGACTATGAGAAGTGGAATAATCATCAGAGAAAAGAATCCAATGG 6587 || || ||||| || || ||||| || |||||| ||| || || | | |||| Sbjct 2777208 TATAGCTAATCATATAGATTATGAAAAATGGAATGCTCACCAACGAGGAACAGGGAATGA 2777149 Query 6588 GCCTGTGTTTCGA-GTCATGGGGCAGTTTTTGGGT 6621 || |||||| | |||||||| || ||||| ||| Sbjct 2777148 TCC-ATGTTTCAAGGTCATGGGTCAATTTTTAGGT 2777115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35394221632428