Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_025358.1 Length=15024 Score E Sequences producing significant alignments: (Bits) Value seq40 118 1e-22 >seq40 Length=949583 Score = 118 bits (130), Expect = 1e-22 Identities = 249/367 (68%), Gaps = 7/367 (2%) Strand=Plus/Plus Query 10190 AGGTAGATTCTTTTCTTTAATGTCTTACGAATTGAGGGATTATTTTGTATCTACTGAATA 10249 ||| |||||||||||| ||||| || | | || || ||||||||| ||| || || Sbjct 1658 AGGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTA 1717 Query 10250 CCTGATCAAGAAATATTTTGTACCCTTATTTGAAGGTCTAACAATGGCTGATGATTTGAA 10309 | || || || ||| ||| ||| | || |||| | |||||||| |||||||| | Sbjct 1718 TTTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAAC 1777 Query 10310 TACAGTAATTAAGAAGATGTTGGATGTCTCAAGCGGCCAGGGAACCAGAGAATATG--AT 10367 || | | ||||| || ||||| ||| || || || || || | || Sbjct 1778 AACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGAT 1837 Query 10368 TATATAACTATTGCAAACAACATCGATTATGAAAAATGGAATAATTATCAAAGGATAGAG 10427 || | |||| || || | || |||||||||||||||||| ||||||| |||| Sbjct 1838 CATCT--CTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAGAG 1895 Query 10428 TCTAACGGTCCAGTATTTACTGTCATGGGAAAATTTTTGGGGCTACCTAATCTCTTTACA 10487 |||| ||| | |||| || ||||| |||||||| || | || || | | | Sbjct 1896 GG-AACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTA 1954 Query 10488 AGAACTCATGAATTCTTCCAAAAAAGCTTGATTTATTATAACCAAAGGCCTGA--TTTAA 10545 ||||| ||||||||||| | |||| | | |||||||| ||||| ||||| ||||| Sbjct 1955 AGAACGCATGAATTCTTTAATAAAATTATATTCTATTATAATCAAAGACCTGACTTTTAA 2014 Query 10546 TGATGGT 10552 |||| || Sbjct 2015 TGATTGT 2021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 47957037546817