Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_025362.1 Length=12240 Score E Sequences producing significant alignments: (Bits) Value seq40 113 4e-21 >seq40 Length=949583 Score = 113 bits (124), Expect = 4e-21 Identities = 221/325 (68%), Gaps = 5/325 (2%) Strand=Plus/Plus Query 7478 AGGAAGAtttttttCACTTATGTCTTGGGAACTGAGGGAGTATTTTGTATCTACTGAATA 7537 ||||||||| ||||| || ||| |||| ||| || |||||||||||| ||| || || Sbjct 1658 AGGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTA 1717 Query 7538 CTTGATTAAGAAGCATTTTGTACCATTGTTTAAAGGCTTGACTATGGCTGATGGATTGAT 7597 || ||||| | |||| ||| || | || ||||| | || ||||| |||| || | Sbjct 1718 TTTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAAC 1777 Query 7598 GACGGTAACTAAGAAAATGTTGGAGTCATCAATGGGACAGGGGAATCCTGATTATGAGAC 7657 || | || |||||| || |||| | ||| || || || |||| || | || Sbjct 1778 AACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGAT 1837 Query 7658 TGTGTCCATTGCTAACCATGTCGATTATGAGAAGTGGAACAACCACCAAAGAAGATTGTC 7717 | || || ||||| || | |||||||| || ||||| ||| |||||| || | Sbjct 1838 CATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAGAGGG 1897 Query 7718 AA--ATCAGGCAGTCTTTAGAGTCATGGGACAATTTTTAGGTTACCCAAATTTGATAAGT 7775 || ||| | | |||| ||| ||||| |||||||||| | ||||| || || Sbjct 1898 AACGATC---CTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTA 1954 Query 7776 CGCACCCATGAATTTTTTGAGAAAA 7800 | || |||||||| ||| | |||| Sbjct 1955 AGAACGCATGAATTCTTTAATAAAA 1979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39051720531792