Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_025364.1 Length=11019 Score E Sequences producing significant alignments: (Bits) Value seq18 143 2e-30 seq40 100 2e-17 >seq18 Length=5623067 Score = 143 bits (158), Expect = 2e-30 Identities = 222/312 (71%), Gaps = 5/312 (2%) Strand=Plus/Minus Query 6222 TTTTTCTCTCTCATGTCTTGGAAATTGAGGGAATACTTTGTGATCACAGAGTACTTAATT 6281 || |||||||||||| |||| | || || || |||||||| || || ||| | || Sbjct 2777388 TTCTTCTCTCTCATGAGCTGGAGGCTAAGAGAGTATTTTGTGATAACCGAATACCTGATA 2777329 Query 6282 AAGACACATTTTGTGCCTCTATTTCATGGTCTCACCATGGCTGACGACATGACTGCAGTC 6341 || || |||||||| |||| | || |||||||||| || ||| | ||| || || Sbjct 2777328 AAATTGCACTTTGTGCCATTATTCAAGGGAATCACCATGGCAGATGACTTAACTACACTC 2777269 Query 6342 ATCAAAAAGATGTTGGAAAGCTCATCTGGACAAGGTTTGTTAGATTACTCAGCGGTATGC 6401 || || ||| | || || | || || ||||||| |||| ||||| || | | ||| Sbjct 2777268 ATAAAGAAGCTTTTAGATACATCCTCGGGACAAGCTTTGACGGATTA-TCGGAGTTATTT 2777210 Query 6402 C--TGGCCAACCATATAGATTATGAAAAATGGAACAATCACCAGCGAAAATTGTCAAACG 6459 | | || || ||||||||||||||||||||||| |||||| ||| | || | Sbjct 2777209 CTATAGCTAATCATATAGATTATGAAAAATGGAATGCTCACCAACGAGGAACAGGGAATG 2777150 Query 6460 GTCC-TGTCTTCAAGGTCATGGGCCAATTCCTTGGGTTTCCGAATCTAATATACAGAACT 6518 ||| ||| |||||||||||||| ||||| | || | || || |||| ||||||| Sbjct 2777149 ATCCATGT-TTCAAGGTCATGGGTCAATTTTTAGGTCTGCCCAACTCAATACTCAGAACT 2777091 Query 6519 CATGAATTTTTT 6530 ||||||||||| Sbjct 2777090 AATGAATTTTTT 2777079 >seq40 Length=949583 Score = 100 bits (110), Expect = 2e-17 Identities = 239/358 (67%), Gaps = 15/358 (4%) Strand=Plus/Plus Query 6215 AGGTAGATTTTTCTCTCTCATGTCTTGGAAATTGAGGGAATACTTTGTGATCACAGAGTA 6274 ||| ||||| || ||||| ||| |||| | | || || || ||||| || || ||||| Sbjct 1658 AGGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTA 1717 Query 6275 CTTAATTAAGACACATTTTGTGCCTCTATTTCATGGTCTCACCATGGCTGACGACATGAC 6334 |||||||| ||||| ||| || || || | || | || ||||| || || | || Sbjct 1718 TTTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAAC 1777 Query 6335 TGCAGTCATCAAAAAGATGTTGGAAAGCTCATCTGGACAAGGTTTGTTAGATTAC----T 6390 | | | || || || |||| | ||||| || |||||| || || ||| | Sbjct 1778 AACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGAT 1837 Query 6391 CAGCGGTATGCCTGGCCAACCATATAGATTATGAAAAATGGAA---CAATCACCAGCGAA 6447 || | ||| || || |||||||||||||||||||||| | |||| || | | Sbjct 1838 CATCTCTATAGCT----AATGATATAGATTATGAAAAATGGAATGCCCATCA-AAGAGGA 1892 Query 6448 AATTGTCAAACGGTCCTGTCTTCAAGGTCATGGGCCAATTCCTTGGGTTTCCGAATCTAA 6507 | | |||| |||| | || || || |||||| |||| | || || || || ||| Sbjct 1893 GAGGG---AACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAA 1949 Query 6508 TATACAGAACTCATGAATTTTTTGAGAAAAGCCTAATATATTACAATGGCAGGCCTGA 6565 | ||||| |||||||| ||| | |||| || | ||||| ||| || ||||| Sbjct 1950 TCGTAAGAACGCATGAATTCTTTAATAAAATTATATTCTATTATAATCAAAGACCTGA 2007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35144628531684