Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_025371.1 Length=11082 Score E Sequences producing significant alignments: (Bits) Value seq18 111 1e-20 seq40 102 6e-18 >seq18 Length=5623067 Score = 111 bits (122), Expect = 1e-20 Identities = 200/283 (71%), Gaps = 17/283 (6%) Strand=Plus/Minus Query 6336 GGTTCTTTTCACTGATGTCTTGGCAGTTGAGAGAGTACTTTGTGATAACGGAATATCTGA 6395 ||||||| || || ||| ||| | | |||||||| ||||||||||| ||||| |||| Sbjct 2777390 GGTTCTTCTCTCTCATGAGCTGGAGGCTAAGAGAGTATTTTGTGATAACCGAATACCTGA 2777331 Query 6396 TTAAGACCCATTATGTTCCACTATTTAAAGGATTGACTATGGCAGATGACCTCACATCAG 6455 | || || | ||| ||| |||| || ||| | || |||||||||||| | || || Sbjct 2777330 TAAAATTGCACTTTGTGCCATTATTCAAGGGAATCACCATGGCAGATGACTTAACTACAC 2777271 Query 6456 TCGTGAAGAAGATGTTGGACAACACAAACGGACAAGGATTAGACGACTATTCATCG---- 6511 || | |||||| | || || | | |||||| | || |||| ||| |||| Sbjct 2777270 TCATAAAGAAGCTTTTAGATACATCCTCGGGACAA-GCTTTGACG--GATT-ATCGGAGT 2777215 Query 6512 -ATTTGTATAGCGAATCACATTGATTACGAAAAATGGAACAATCATCA--GAGGAA-AGA 6567 |||| |||||| ||||| || ||||| ||||||||||| ||| || |||||| || Sbjct 2777214 TATTTCTATAGCTAATCATATAGATTATGAAAAATGGAATGCTCACCAACGAGGAACAGG 2777155 Query 6568 GTCAAATGGACCGGTCTTTC-GCGTCATGGGACAATTTTTGGG 6609 | ||| || | | |||| |||||||| |||||||| || Sbjct 2777154 G---AAT-GATCCATGTTTCAAGGTCATGGGTCAATTTTTAGG 2777116 >seq40 Length=949583 Score = 102 bits (112), Expect = 6e-18 Identities = 195/283 (69%), Gaps = 7/283 (2%) Strand=Plus/Plus Query 6332 GGAAGGTTCTTTTCACTGATGTCTTGGCAGTTGAGAGAGTACTTTGTGATAACGGAATAT 6391 ||||| |||||||| || ||| ||||| | |||||||| ||||| || ||||| ||| Sbjct 1659 GGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTAT 1718 Query 6392 CTGATTAAGACCCATTATGTTCCACTATTTAAAGGATTGACTATGGCAGATGACCTCACA 6451 | ||||| ||||||||||| || || ||||| | || ||||||||||| | ||| Sbjct 1719 TTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAACA 1778 Query 6452 TCAGTCGTGAAGAAGATGTTGGACAACACAAACGGACAAGGATTAGACGACTA-TTCATC 6510 | | ||||| || |||| | || || ||||| | | ||||| ||| Sbjct 1779 ACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGATC 1838 Query 6511 GATTTGTATAGCGAATCACATTGATTACGAAAAATGGAACAATCATC--AGAGGAAAGAG 6568 || | |||||| ||| | || ||||| ||||||||||| |||| |||||| || | Sbjct 1839 -ATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAGAGGG 1897 Query 6569 TCAAATGGACCGGTCTTTCGCGTCATGGGACAATTTTTGGGAT 6611 || | || | ||| || ||||| ||||||| |||| Sbjct 1898 ---AACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGAT 1937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35346222959208