Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_025376.1 Length=11096 Score E Sequences producing significant alignments: (Bits) Value seq40 95.1 9e-16 seq18 89.7 4e-14 >seq40 Length=949583 Score = 95.1 bits (104), Expect = 9e-16 Identities = 212/317 (67%), Gaps = 5/317 (2%) Strand=Plus/Plus Query 6342 GGAAGATTTTTCTCCCTAATGTCATGGCAGTTAAGGGAGTACTTCGTCATCACAGAGTAC 6401 |||||||| || || |||||| |||| |||| ||||| || || || || ||||| Sbjct 1659 GGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTAT 1718 Query 6402 TTGATCAAAACACACTATGTCCCGTTGTTCAAGGGACTGACGATGGCAGATGACCTTACA 6461 || || ||| ||| ||||| || | ||||| || | || ||||||||||| | ||| Sbjct 1719 TTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAACA 1778 Query 6462 TCCGTTGTGAAGAAGATGTTGGACAACACAAATGGACAAGGATTGGATGACTACTCCTCT 6521 | | ||||| || |||| | || || ||||| ||| ||||||| Sbjct 1779 ACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGATC 1838 Query 6522 ATCTGTATTGCCAACCACATTGACTACGAAAAATGGAATAATCATC--AGAGGAAAGAGT 6579 |||| ||| || || | || || || |||||||||||| |||| |||||| || | Sbjct 1839 ATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAGAGGG- 1897 Query 6580 CTAATGGTCCAGTGTTTCGAGTAATGGGACAGTTTCTAGGGTATCCTAGACTGTTTGAAA 6639 || | ||| | ||| ||| ||||| | ||| |||| | || | | | | || Sbjct 1898 --AACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTAA 1955 Query 6640 GGACACATGAGTTCTTT 6656 | || ||||| |||||| Sbjct 1956 GAACGCATGAATTCTTT 1972 >seq18 Length=5623067 Score = 89.7 bits (98), Expect = 4e-14 Identities = 190/277 (69%), Gaps = 9/277 (3%) Strand=Plus/Minus Query 6348 TTTTTCTCCCTAATGTCATGGCAGTTAAGGGAGTACTTCGTCATCACAGAGTACTTGATC 6407 || ||||| || ||| ||| | |||| ||||| || || || || || ||| |||| Sbjct 2777388 TTCTTCTCTCTCATGAGCTGGAGGCTAAGAGAGTATTTTGTGATAACCGAATACCTGATA 2777329 Query 6408 AAAACACACTATGTCCCGTTGTTCAAGGGACTGACGATGGCAGATGACCTTACATCCGTT 6467 ||| |||| ||| || || ||||||||| | || |||||||||||| | || | | Sbjct 2777328 AAATTGCACTTTGTGCCATTATTCAAGGGAATCACCATGGCAGATGACTTAACTACACTC 2777269 Query 6468 GTGAAGAAGATGTTGGACAACACAAATGGACAAGGATTGGATGACTA-CTCCTCTATCTG 6526 | |||||| | || || | | ||||||| ||| || || | ||| | Sbjct 2777268 ATAAAGAAGCTTTTAGATACATCCTCGGGACAAGCTTTGACGGATTATCGGAGTTATTTC 2777209 Query 6527 TATTGCCAACCACATTGACTACGAAAAATGGAATAATCATCA--GAGGAA-AGAGTCTAA 6583 ||| || || || || || || |||||||||||| ||| || |||||| || | || Sbjct 2777208 TATAGCTAATCATATAGATTATGAAAAATGGAATGCTCACCAACGAGGAACAGGG---AA 2777152 Query 6584 TGGTCCAGTGTTTCGA-GTAATGGGACAGTTTCTAGG 6619 || |||| |||||| | || ||||| || ||| |||| Sbjct 2777151 TGATCCA-TGTTTCAAGGTCATGGGTCAATTTTTAGG 2777116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35391021720880