Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_025378.1 Length=11202 Score E Sequences producing significant alignments: (Bits) Value seq18 114 9e-22 seq40 104 2e-18 >seq18 Length=5623067 Score = 114 bits (126), Expect = 9e-22 Identities = 233/345 (68%), Gaps = 1/345 (0%) Strand=Plus/Minus Query 6383 TTCTTTTCTCTCATGTCTTGGAAATTGAGAGAATACTTCGTCATAACCGAGCACCTAATT 6442 ||||| ||||||||| |||| | ||||| || || || |||||||| |||| || Sbjct 2777388 TTCTTCTCTCTCATGAGCTGGAGGCTAAGAGAGTATTTTGTGATAACCGAATACCTGATA 2777329 Query 6443 AAGACTCACTTTGTCCCTCTGTTCCACGGACTTACGATGGCAGATGATCTCACATCAGTG 6502 || |||||||| || | ||| | ||| | || ||||||||||| | || || | Sbjct 2777328 AAATTGCACTTTGTGCCATTATTCAAGGGAATCACCATGGCAGATGACTTAACTACACTC 2777269 Query 6503 ATCAAGAAGATGATGGACAGTTCCTCGGGGCAGGGGTTGACAGATTA-CTCAGCTGTATG 6561 || |||||| | | || | |||||||| || | ||||| ||||| | || | | | Sbjct 2777268 ATAAAGAAGCTTTTAGATACATCCTCGGGACAAGCTTTGACGGATTATCGGAGTTATTTC 2777209 Query 6562 CATAGCCAATCATATCGACTACGAAAAATGGAACAATCACCAGCGGAAAGAATCCAATGG 6621 ||||| |||||||| || || ||||||||||| |||||| || | | |||| Sbjct 2777208 TATAGCTAATCATATAGATTATGAAAAATGGAATGCTCACCAACGAGGAACAGGGAATGA 2777149 Query 6622 GCCGGTATTCCGAGTAATGGGCCAATTCTTGGGCTTCCCCAATCTGATATCCAGAACGCA 6681 || ||| || ||||| ||||| || || | ||||| ||| |||||| | Sbjct 2777148 TCCATGTTTCAAGGTCATGGGTCAATTTTTAGGTCTGCCCAACTCAATACTCAGAACTAA 2777089 Query 6682 CGAATTCTTTGAGAAAAGTTTGGTTTATTACAATGGCCGGCCAGA 6726 ||||| ||| |||| | ||||||| ||| || ||||| Sbjct 2777088 TGAATTTTTTAGTAAAATTACTTTTTATTATAATCAACGACCAGA 2777044 >seq40 Length=949583 Score = 104 bits (114), Expect = 2e-18 Identities = 229/340 (67%), Gaps = 15/340 (4%) Strand=Plus/Plus Query 6383 TTCTTTTCTCTCATGTCTTGGAAATTGAGAGAATACTTCGTCATAACCGAGCACCTAATT 6442 ||||||||||| ||| |||| | | ||||| || || || || || ||| | ||||| Sbjct 1665 TTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTATTTAATT 1724 Query 6443 AAGACTCACTTTGTCCCTCTGTTCCACGGACTTACGATGGCAGATGATCTCACATCAGTG 6502 || || | ||| || || ||| | || |||| |||||||||||| | ||| | || Sbjct 1725 AAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAACAACTTTG 1784 Query 6503 ATCAAGAAGATGATGGACAGTTCCTCGGGGCAGGGGTTGACAGATTAC----TCAGCTGT 6558 | ||||| || |||| | ||| || || || || || | || ||| ||| || | Sbjct 1785 ACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGATCATCTCT 1844 Query 6559 ATGCATAGCCAATCATATCGACTACGAAAAATGGAA---CAATCACCAGCGGAAAGAATC 6615 ||||| ||| |||| || || ||||||||||| | |||| || ||| || Sbjct 1845 ----ATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCA-AAGAGGAGAG---G 1896 Query 6616 CAATGGGCCGGTATTCCGAGTAATGGGCCAATTCTTGGGCTTCCCCAATCTGATATCCAG 6675 || | || | || ||| |||||| |||| || || || || || | || || Sbjct 1897 GAACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTAAG 1956 Query 6676 AACGCACGAATTCTTTGAGAAAAGTTTGGTTTATTACAAT 6715 |||||| ||||||||| | |||| | | | ||||| ||| Sbjct 1957 AACGCATGAATTCTTTAATAAAATTATATTCTATTATAAT 1996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35730212344968