Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_025392.1 Length=11121 Score E Sequences producing significant alignments: (Bits) Value seq18 170 1e-38 seq40 168 5e-38 >seq18 Length=5623067 Score = 170 bits (188), Expect = 1e-38 Identities = 288/409 (70%), Gaps = 15/409 (4%) Strand=Plus/Minus Query 6341 GAGAATATTTTGTGATAACCGAATATCTGATCAAAACGCATTTTGTCCCTCTCTTTTATG 6400 |||| |||||||||||||||||||| ||||| ||| ||| ||||| || | || | | Sbjct 2777360 GAGAGTATTTTGTGATAACCGAATACCTGATAAAATTGCACTTTGTGCCATTATTCAAGG 2777301 Query 6401 GACTCACCATGGCTGATGATATGACTTCAGTCATCAAGAAAATGCTAGAAAGTTCATCCG 6460 || |||||||||| ||||| | ||| || |||| ||||| | |||| | || || | Sbjct 2777300 GAATCACCATGGCAGATGACTTAACTACACTCATAAAGAAGCTTTTAGATACATCCTCGG 2777241 Query 6461 GTCAAGGGTTGAATGACTAT-TCTGCAATCTCAATCGCAAATCACATAGATTATGAGAAA 6519 | |||| |||| || ||| | || || || || ||||| ||||||||||| ||| Sbjct 2777240 GACAAGCTTTGACGGATTATCGGAGTTATTTCTATAGCTAATCATATAGATTATGAAAAA 2777181 Query 6520 TGGAACAATCACCAGAGAAGAACATCAAACGAACC-TGTATTCAAAGTGATGGGACAATT 6578 ||||| |||||| || ||||| || || || ||| ||||| || ||||| ||||| Sbjct 2777180 TGGAATGCTCACCAACGAGGAACAGGGAATGATCCATGT-TTCAAGGTCATGGGTCAATT 2777122 Query 6579 TCTGGGATATCCAAATTTGATA-TCACGCACCCATGAATTCTTTGAGAAGAGTTTGATTT 6637 | | || || || | ||| ||| | || ||||||| ||| || | | ||| Sbjct 2777121 TTTAGGTCTGCCCAACTCAATACTCA-GAACTAATGAATTTTTTAGTAAAATTACTTTTT 2777063 Query 6638 ATTATAATGGA-----AGACCCGATTTGATGA-GAGTCCGGAATGGAGTGGTTGAGAATT 6691 |||||||| | ||||||||| |||| | || | ||||| || | || |||| Sbjct 2777062 ATTATAATCAACGACCAGACCCGATATGATTATGAAT----AATGGTGTCATAGAAAATT 2777007 Query 6692 CCTCAGATACTAGAGTATGTTGGAATGGACAAGCCGGGGGTCTAGAGGG 6740 ||||| ||||||||||||||||||||| || || | |||||| Sbjct 2777006 TGACAGATCAGAGAGTATGTTGGAATGGACAATTGGGAGGGCAAGAGGG 2776958 >seq40 Length=949583 Score = 168 bits (186), Expect = 5e-38 Identities = 376/556 (68%), Gaps = 10/556 (2%) Strand=Plus/Plus Query 6306 AGGTAGATTCTTTTCATTGATGTCATGGAAATTGCGAGAATATTTTGTGATAACCGAATA 6365 ||| ||||||||||| | ||| ||| | | |||| |||||||| || || || || Sbjct 1658 AGGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTA 1717 Query 6366 TCTGATCAAAACGCATTTTGTCCCTCTCTTTTATGGACTCACCATGGCTGATGATATGAC 6425 | | || ||| |||| ||| || || || | || | || ||||| |||||| | || Sbjct 1718 TTTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAAC 1777 Query 6426 TTCAGTCATCAAGAAAATGCTAGAAAGTTCATCCGGTCAAGGGTTGAATGACTATTCTGC 6485 | | | |||||| |||| || | |||||| |||||||| || |||||| | | Sbjct 1778 AACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTA--CGGG 1835 Query 6486 A--ATCTCAATCGCAAATCACATAGATTATGAGAAATGGAACAATCACCAGAGAAGAACA 6543 | ||||| || || ||| | ||||||||||| |||||||| || || || || | | Sbjct 1836 ATCATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAG-AGGAGA 1894 Query 6544 TCAAACGAACCTGTATTCAAAGTGATGGGACAATTTCTGGGATATCCAAATTTGATATCA 6603 ||||| ||| | || ||||||||||| ||||| | |||| ||||| || || | Sbjct 1895 GGGAACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTA 1954 Query 6604 CGCACCCATGAATTCTTTGAGAAGAGTTTGATTTATTATAATGGAAGACCCGA--TTTGA 6661 | || |||||||||||| | || | | | | ||||||||| |||||| || ||| | Sbjct 1955 AGAACGCATGAATTCTTTAATAAAATTATATTCTATTATAATCAAAGACCTGACTTTTAA 2014 Query 6662 TGAGAGTCCGGAATGGAGTGGTTGAGAATTCCTCAGATACTAGAGTATGTTGGAATGGAC 6721 ||| || || ||||| |||| ||||| || || ||||| |||||||| | Sbjct 2015 TGATTGTTCGAAATGGTCGAATTGAAAATTCTACACGGCATATCGTATGCTGGAATGGTC 2074 Query 6722 A-AGCCGGGGGTCTAGAGGGTTTGAGACAGAAGGGCTGGAGCATCCTAAATTTGTTGGTT 6780 | | ||||| | ||| || | || || || ||| || | | ||| |||| Sbjct 2075 AGTGTAGGGGGCCAAGAAGGGATTAGGCAACGAGGATGGTGCGTGGTCAATGCATTGGCA 2134 Query 6781 ATACAGAGGG-AATCCAAAATCCGTAATACATCTGTCAAGGTATTGGCACAAGGAGACAA 6839 ||| | |||| || ||| ||| | || || || | | ||||||||||| || || Sbjct 2135 ATAGAAAGGGAAAGTCAAGATCAG-AACACCAAAGTAAGCCTTTTGGCACAAGGGGATAA 2193 Query 6840 TCAAGTAATTTGTACC 6855 || || || |||||| Sbjct 2194 CCAGGTTATATGTACC 2209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35471019509580