Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_025394.1 Length=11103 Score E Sequences producing significant alignments: (Bits) Value seq40 152 4e-33 >seq40 Length=949583 Score = 152 bits (168), Expect = 4e-33 Identities = 252/358 (70%), Gaps = 7/358 (2%) Strand=Plus/Plus Query 6307 GATTCTTTTCGTTAATGTCTTGGAGATTACGGGAATACTTTGTAATTACTGAGTATTTGA 6366 |||||||||| ||||| |||| || || | || || ||||||||||| |||||||| | Sbjct 1663 GATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTATTTAA 1722 Query 6367 TTAAAACACACTTTGTTCCGTTATTTC--ATGGATTGACTATGGCAGATGATATGACGGC 6424 ||||| ||| | |||||| | |||| | ||||| || |||||||||||| | || | Sbjct 1723 TTAAATAACATTATGTTCCCCT-TTTCAAAGGGATT-ACAATGGCAGATGATTTAACAAC 1780 Query 6425 TGTGATCaaaaaaaTGATGGAGAGTTCATCAGGTCAGGGTCTCAACGATTATTCTTCAAT 6484 | ||| || ||| || |||| | |||||||||||| ||||| || || || Sbjct 1781 TTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGATCAT 1840 Query 6485 ATGTCTGGCTAATCACATTGATTATGAGAAATGGAACAATCATCAGAGAAAAGAGTCAAA 6544 | | | |||||| | || |||||||| |||||||| ||||| ||| |||| || Sbjct 1841 CTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAGAG-GGAA 1899 Query 6545 TGGACCTGTTTTCCGTGTCATGGGTCAGTTCTTGGGATTTCCTAACCTTATATCCAGGAC 6604 | ||| |||| || ||||| | || || ||||| || ||| | || || || Sbjct 1900 CGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTAAGAAC 1959 Query 6605 TCATGAATTCTTTGAAAAAAGTCTGATATATTACAATGGGAGACCAGA--TTTGATGA 6660 |||||||||||| | |||| | | | ||||| ||| ||||| || ||| |||| Sbjct 1960 GCATGAATTCTTTAATAAAATTATATTCTATTATAATCAAAGACCTGACTTTTAATGA 2017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35413421101716