Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_025396.1 Length=15442 Score E Sequences producing significant alignments: (Bits) Value seq40 122 9e-24 >seq40 Length=949583 Score = 122 bits (134), Expect = 9e-24 Identities = 363/547 (66%), Gaps = 16/547 (3%) Strand=Plus/Plus Query 10622 AGGTAGGTTTTTCTCTTTAATGAGTTATGAGTTAAGAGACTACTTTGTTGCAACTGAATA 10681 ||| || || || ||| ||||||||| ||||||| || ||||| || || || Sbjct 1658 AGGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTA 1717 Query 10682 CTTGATTAAGAAATATTATGTACCATTGTTTGAAGGACTTACAATGGCAGATGATTTGAA 10741 || ||||| || ||||||| || | || |||| ||||||||||||||||||| | Sbjct 1718 TTTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAAC 1777 Query 10742 CACTGTAATTAAAAAGATGCTGGACGTGTCATCCGGTCAAGGAACAAGAAACTA--TGAT 10799 ||| | | || || ||||||| ||||| |||||||| |||| ||| Sbjct 1778 AACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGAT 1837 Query 10800 TATGTATCCATAGCCAACAACATTGATTATGAGAAATGGAATAATTATCAAAGGAAAGAA 10859 | | || ||||| || | || |||||||| ||||||||| ||||||| || | Sbjct 1838 CA--TCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAG-A 1894 Query 10860 TCAAATGGACCGGTATTCAGAGTAATGGGACAATTCCTTGGAATGGAAAATCTTATAGTT 10919 || | || | || | ||| ||||| |||| | ||| || ||| | || || Sbjct 1895 GGGAACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTA 1954 Query 10920 CGGACACATGAATTCTTTGAAAATAGTTTGGTCTATTATAACCAGCGAGCAGAC--TTAA 10977 | || |||||||||||| | || | | | |||||||||| || || | ||| |||| Sbjct 1955 AGAACGCATGAATTCTTTAATAAAATTATATTCTATTATAATCAAAGACCTGACTTTTAA 2014 Query 10978 TGATGGT--GCAAGGGAGACATTGTTTAAATAAAACA-GGAATCAAGGTGTGTTGGGAGG 11034 |||| || | || || |||| |||| ||| || || | || || ||| | | Sbjct 2015 TGATTGTTCGAAATGGTCGAATTG--AAAATTCTACACGGCAT-ATCGTATGCTGGAATG 2071 Query 11035 GTCAG-AAGGGGGGATTAGAAGGGTTGAGGCAAAAAGGATGGAGTATATTGAATTATCTA 11093 ||||| ||||| ||||||| | |||||| ||||||| | | | ||| | Sbjct 2072 GTCAGTGTAGGGGGCCAAGAAGGGATTAGGCAACGAGGATGGTGCGTGGTCAATGCATTG 2131 Query 11094 ATGATAGAGAGGGAGAGT-AAGATAAGAAACACTAAGGTTAAAATTCTAGCTCAAGGGGA 11152 ||||| ||||| ||| ||||| || ||||| || || | || | || |||||||| Sbjct 2132 GCAATAGAAAGGGAAAGTCAAGATCAG-AACACCAAAGTAAGCCTTTTGGCACAAGGGGA 2190 Query 11153 CAATCAG 11159 || ||| Sbjct 2191 TAACCAG 2197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 49294599546855