Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_025400.1 Length=15444 Score E Sequences producing significant alignments: (Bits) Value seq40 118 1e-22 seq18 105 7e-19 >seq40 Length=949583 Score = 118 bits (130), Expect = 1e-22 Identities = 249/367 (68%), Gaps = 7/367 (2%) Strand=Plus/Plus Query 10624 AGGCAGGTTTTTCTCTTTAATGAGTTATGAGTTAAGAGACTACTTTGTTGCAACTGAATA 10683 ||| || || || ||| ||||||||| ||||||| || ||||| || || || Sbjct 1658 AGGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTA 1717 Query 10684 CTTGATCAAAAAATATTATGTACCATTATTCGAAGGACTTACAATGGCGGATGATTTGAA 10743 || || ||| || ||||||| || | ||| |||| |||||||||| |||||||| | Sbjct 1718 TTTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAAC 1777 Query 10744 TACAGTCATCAAAAAGATGCTGGATGTGTCCTCCGGCCAAGGAACAAGAAACTATG--AT 10801 || | | || || |||||||| || || || ||||| |||| | || Sbjct 1778 AACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGAT 1837 Query 10802 TATGTGTCAATAGCTAACAATATTGATTATGAAAAATGGAATAATTATCAAAGAAAAGAA 10861 || | | |||||||| |||| |||||||||||||||||| |||||||| || | Sbjct 1838 CATCTCT--ATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAG-A 1894 Query 10862 TCAAATGGACCAGTATTCAGAGTAATGGGGCAATTCCTTGGAATGGAAAATTTGATAGTT 10921 || | || | || | ||| ||||| |||| | ||| || ||| || || || Sbjct 1895 GGGAACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTA 1954 Query 10922 CGGACACATGAATTCTTTGAAAATAGTTTGGTTTATTATAACCAGCGAGCAGA--TTTAA 10979 | || |||||||||||| | || | | | | |||||||| || || | || ||||| Sbjct 1955 AGAACGCATGAATTCTTTAATAAAATTATATTCTATTATAATCAAAGACCTGACTTTTAA 2014 Query 10980 TGATGGT 10986 |||| || Sbjct 2015 TGATTGT 2021 >seq18 Length=5623067 Score = 105 bits (116), Expect = 7e-19 Identities = 236/350 (67%), Gaps = 7/350 (2%) Strand=Plus/Minus Query 10629 GGTTTTTCTCTTTAATGAGTTATGAGTTAAGAGACTACTTTGTTGCAACTGAATACTTGA 10688 |||| |||||| | ||||| | | ||||||| || ||||| ||| |||||| ||| Sbjct 2777390 GGTTCTTCTCTCTCATGAGCTGGAGGCTAAGAGAGTATTTTGTGATAACCGAATACCTGA 2777331 Query 10689 TCAAAAAATATTATGTACCATTATTCGAAGGACTTACAATGGCGGATGATTTGAATACAG 10748 | ||| | | ||| ||||||||| | ||| | || ||||| ||||| || | |||| Sbjct 2777330 TAAAATTGCACTTTGTGCCATTATTCAAGGGAATCACCATGGCAGATGACTTAACTACAC 2777271 Query 10749 TCATCAAAAAGATGCTGGATGTGTCCTCCGGCCAAGGAACAAGAAACTAT--GATTATGT 10806 |||| || ||| | | ||| ||||| || |||| | | ||| || | | | Sbjct 2777270 TCATAAAGAAGCTTTTAGATACATCCTCGGGACAAGCTTTGACGGATTATCGGAGT-TAT 2777212 Query 10807 GTCAATAGCTAACAATATTGATTATGAAAAATGGAATAATTATCAAAGAAAAGAATCAAA 10866 || |||||||| |||| |||||||||||||||||| | | ||| || | | || Sbjct 2777211 TTCTATAGCTAATCATATAGATTATGAAAAATGGAATGCTCACCAACGAGGAACAGGGAA 2777152 Query 10867 TGGACCAGTATTCAGAGTAATGGGGCAATTCCTTGGAATGGAAAATTTGATAGTTCGGAC 10926 || ||| |||| || ||||| ||||| | || || || | ||| | | || Sbjct 2777151 TGATCCATGTTTCAAGGTCATGGGTCAATTTTTAGGTCTGCCCAACTCAATACTCAGAAC 2777092 Query 10927 ACATGAATTCTTT--GAAAATAGTTTGGTTTATTATAACCAGCGAGCAGA 10974 ||||||| ||| ||||| || |||||||||| || ||| |||| Sbjct 2777091 TAATGAATTTTTTAGTAAAATTACTT--TTTATTATAATCAACGACCAGA 2777044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 49300999365037