Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_025406.1 Length=11141 Score E Sequences producing significant alignments: (Bits) Value seq40 127 1e-25 >seq40 Length=949583 Score = 127 bits (140), Expect = 1e-25 Identities = 314/464 (68%), Gaps = 18/464 (4%) Strand=Plus/Plus Query 6351 AGGTAGATTCTTTTCATTGATGTCATGGGAGTTACGAGAGTACTTTGTCATTACCGAATA 6410 ||| ||||||||||| | ||| ||| || ||||||| ||||| ||||| || || Sbjct 1658 AGGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTA 1717 Query 6411 TTTAATAAAACACCATTTTGTACCTCTATT-TAAGGGATTAACAATGGCAGATGATATGA 6469 |||||| ||| | |||| ||| || || || |||||||| ||||||||||||||| | | Sbjct 1718 TTTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATT-ACAATGGCAGATGATTTAA 1776 Query 6470 CAGAAGTGATCAAAAAGATGCTGGAAAGAAGTCA--AGGCCAAGGAGAATTAGACTA--T 6525 || ||| || || |||||| | | ||| ||| ||||| ||||| Sbjct 1777 CAACTTTGACAAAGAAATTGCTGG--ATACTTCATCAGGTCAAGGTCTGGCTGACTACGG 1834 Query 6526 CAACATGTGAGCATAGCGAACCATATAGATTATGAAAAGTGGAACAATCATCAAAGGAAA 6585 | ||| | ||||| || |||||||||||||||| ||||| |||||||| | Sbjct 1835 GATCATCT--CTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGA 1892 Query 6586 GAATCAAATGGACCAGTTTTCCGTGTGATGGGCCAATTCTTGGGCTATCCATCTTTGATA 6645 | | || | || |||| ||||||||| |||| || || | ||| || || Sbjct 1893 G-AGGGAACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATC 1951 Query 6646 GAGAGAACGCATGAGTTCTTTGAGAAAAGTCTTGTTTATTACAATGGTAGACCAGAC--T 6703 | ||||||||||| |||||| | |||| | | | ||||| ||| ||||| ||| | Sbjct 1952 GTAAGAACGCATGAATTCTTTAATAAAATTATATTCTATTATAATCAAAGACCTGACTTT 2011 Query 6704 TGATGAAGGTAGAAAATGGTGTAGTATTG--AATAAAACAGATAATTTAGTTTGCTGGAA 6761 | |||| || ||||| || | |||| ||| ||| || | || |||||||| Sbjct 2012 TAATGATTGTTCGAAATG--GTCGAATTGAAAATTCTACACGGCATATCGTATGCTGGAA 2069 Query 6762 TGGTCA-AGCAGGGGGGTTAGAGGGACTGAGACAAAAAGGTTGG 6804 |||||| | |||||| ||| || | || ||| ||| ||| Sbjct 2070 TGGTCAGTGTAGGGGGCCAAGAAGGGATTAGGCAACGAGGATGG 2113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35535017740540