Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_028230.1 Length=12020 Score E Sequences producing significant alignments: (Bits) Value seq40 132 4e-27 >seq40 Length=949583 Score = 132 bits (146), Expect = 4e-27 Identities = 228/326 (70%), Gaps = 9/326 (3%) Strand=Plus/Plus Query 7233 GGAAGAtttttttCATTAATGTCTTGGGAATTAAGAGAATATTTTGTTTCTACTGAATAT 7292 |||||||| ||||| ||||| |||| | ||||||| |||||||| ||| || ||| Sbjct 1659 GGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTAT 1718 Query 7293 CTGATaaaaaaaTATTATGTTCCATTATTCAA-GGGATTGACAATGGCAGATGGATTAAT 7351 | || ||| || |||||||||| | ||||| |||||| ||||||||||||| |||| Sbjct 1719 TTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATT-ACAATGGCAGATGATTTAAC 1777 Query 7352 GACAGTGGTGAAGAAAATGATTGATTCATCATGCGGGCAAGGAAATCTAGATTACAAC-- 7409 || || |||||| || | ||| | |||| || ||||| ||| | | || || Sbjct 1778 AACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGG---TCTGGCTGACTACGG 1834 Query 7410 -ACTGTATCAATTGCCAATCATATAGATTATACAAAGTGGAACAATCACCAGAGAAGGAA 7468 | | || || || ||| ||||||||||| ||| ||||| || || || |||| Sbjct 1835 GATCATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAG-AGGAG 1893 Query 7469 GTCCAATCACCCTGTTTTTACTGTGATGGGACAGTTTTTGGGGTACCCGAACCTGATCAC 7528 || | ||| |||||| |||||||| | ||||| || | || ||| | ||| Sbjct 1894 AGGGAACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGT 1953 Query 7529 TAGAACTCATGAGTTCTTCGAAAAAA 7554 ||||| ||||| ||||| | |||| Sbjct 1954 AAGAACGCATGAATTCTTTAATAAAA 1979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 38347739991232