Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_028234.1 Length=12162 Score E Sequences producing significant alignments: (Bits) Value seq40 145 6e-31 seq18 141 7e-30 >seq40 Length=949583 Score = 145 bits (160), Expect = 6e-31 Identities = 230/325 (71%), Gaps = 5/325 (2%) Strand=Plus/Plus Query 7423 AGGTAGAtttttttCTCTAATGACTTGGAGATTGAGAGAATACTTTGTTGCAACTGAATT 7482 ||| ||||| ||||||||||||| |||| || | ||||| || ||||| || || | Sbjct 1658 AGGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTA 1717 Query 7483 CCTGATTAAAAAACATTTTGTCCCTCTATTTGAGGGACTAACTATGGCAGATGATTTGAT 7542 | |||||| |||||| ||| || || || | || | || |||||||||||||| | Sbjct 1718 TTTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTT-AA 1776 Query 7543 CACAGTTGTGaaaaaaaTGATTCGAAAC-TCAAATGGACAAGGATTAAATGATTACAGTA 7601 || ||| ||| |||| | || || ||| || ||||| | ||| ||| | | Sbjct 1777 CAACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGA 1836 Query 7602 GAATAACTATAGCAAATCATATTGATTATGAAAAGTGGAATAATCATCAAAGAAAGGA-A 7660 || ||||||| ||| |||| ||||||||||| |||||| |||||||| |||| | Sbjct 1837 TCATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAG--AGGAGA 1894 Query 7661 TCAAATAAATATGTTTTTAAAGTTATGGGGCAATTCTTAGGTTATCCTAATTTAATTGTC 7720 || | | |||||||||| ||||| |||| ||||| | || || ||||| || Sbjct 1895 GGGAACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTA 1954 Query 7721 AGAACCCATGAGTTTTTTGAAAAAA 7745 ||||| ||||| || ||| | |||| Sbjct 1955 AGAACGCATGAATTCTTTAATAAAA 1979 >seq18 Length=5623067 Score = 141 bits (156), Expect = 7e-30 Identities = 301/438 (69%), Gaps = 15/438 (3%) Strand=Plus/Minus Query 7430 tttttttCTCTAATGACTTGGAGATTGAGAGAATACTTTGTTGCAACTGAATTCCTGATT 7489 || || ||||| |||| ||||| | ||||| || ||||| ||| |||| |||||| Sbjct 2777388 TTCTTCTCTCTCATGAGCTGGAGGCTAAGAGAGTATTTTGTGATAACCGAATACCTGATA 2777329 Query 7490 AAAAAACATTTTGTCCCTCTATTTGAGGGACTAACTATGGCAGATGATTTGATCACAGTT 7549 ||| || ||||| || |||| ||||| | || ||||||||||| || | ||| | Sbjct 2777328 AAATTGCACTTTGTGCCATTATTCAAGGGAATCACCATGGCAGATGACTTAACTACACTC 2777269 Query 7550 GTGaaaaaaaTGATTCGAAAC-TCAAATGGACAAGGATTAAATGATTACAGTAG-AATAA 7607 | ||| || || || || || ||||||| || | ||||| | || || Sbjct 2777268 AT-AAAGAAGCTTTTAGATACATCCTCGGGACAAGCTTTGACGGATTATCGGAGTTATTT 2777210 Query 7608 CTATAGCAAATCATATTGATTATGAAAAGTGGAATAATCATCAAAGAAAGGAATCA---A 7664 ||||||| |||||||| ||||||||||| |||||| ||| ||| | ||||| || | Sbjct 2777209 CTATAGCTAATCATATAGATTATGAAAAATGGAATGCTCACCAACG--AGGAA-CAGGGA 2777153 Query 7665 AT-AAATATGTTTTTAAAGTTATGGGGCAATTCTTAGGTTATCCTAATTTAATTGTCAGA 7723 || | ||| ||| || || ||||| ||||| |||||| || || | ||| ||||| Sbjct 2777152 ATGATCCATG-TTTCAAGGTCATGGGTCAATTTTTAGGTCTGCCCAACTCAATACTCAGA 2777094 Query 7724 ACCCATGAGTTTTTTGAAAAAAGTGTCATATACTACGCTGGGCGAGCAGACTGGATAGGA 7783 || |||| |||||| |||| | | || || | ||| ||||| |||| || Sbjct 2777093 ACTAATGAATTTTTTAGTAAAATTACTTTTTATTATAATCAACGACCAGACCCGATATGA 2777034 Query 7784 GTAAAGAGAAATGAGTTTAT---AAATTTAACAGAACATAGATCATTTTGGAATGGACAA 7840 | | || |||| | || |||||| ||||| || ||| || ||||||||||||| Sbjct 2777033 -TTATGAATAATGGTGTCATAGAAAATTTGACAGATCAGAGAGTATGTTGGAATGGACAA 2776975 Query 7841 AAAGGAGGACTAGAGGGA 7858 ||||| | ||||||| Sbjct 2776974 TTGGGAGGGCAAGAGGGA 2776957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 38802127431048