Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_028235.1 Length=12994 Score E Sequences producing significant alignments: (Bits) Value seq40 116 3e-22 >seq40 Length=949583 Score = 116 bits (128), Expect = 3e-22 Identities = 239/352 (68%), Gaps = 5/352 (1%) Strand=Plus/Plus Query 8271 GGGAGAtttttttCATTAATGTCTTGGGAGTTGAGAGAATATTTTGTATATACAGAGTAT 8330 || ||||| ||||| ||||| |||| | ||||| ||||||||| ||| |||||| Sbjct 1659 GGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTAT 1718 Query 8331 TTAATAAAGGAGTATTTTGTTCCATTATTCCATGGCTTGACCATGGCAGATGACCTGCAG 8390 ||||| || | ||| |||||| | ||| | || | || ||||||||||| | | Sbjct 1719 TTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGA--TTTAA 1776 Query 8391 GAAGTT--ATTAAGAAAATGTTGGAGAATGTAAGTGGACAAGGGTTGGATAATTACGAGT 8448 || || | |||||| || |||| | | | || ||||| ||| | | |||| | Sbjct 1777 CAACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGA 1836 Query 8449 ATATATCAATTGCGAATCATATTGATTATGAAAAATGGAACAATCATCAACGATACGAAT 8508 || || || || ||| |||| ||||||||||||||||| |||||| || | | Sbjct 1837 TCATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAG-AG 1895 Query 8509 CTAATTGTCATATTTTTAAAGTTATGGGTCAATGTTTTGGTCTTCCCAATTTGTTTTTAC 8568 || || | |||||||||| ||||| ||| ||| || | || || || | || Sbjct 1896 GGAACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTAA 1955 Query 8569 GTTCTCATGAATTTTTTCAAAAAAGCCTGATTTATTACAACCAACGACCTGA 8620 | | |||||||| ||| | |||| | | ||||| || ||| ||||||| Sbjct 1956 GAACGCATGAATTCTTTAATAAAATTATATTCTATTATAATCAAAGACCTGA 2007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41464453838984