Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_028236.1 Length=11072 Score E Sequences producing significant alignments: (Bits) Value seq18 125 5e-25 seq40 116 3e-22 >seq18 Length=5623067 Score = 125 bits (138), Expect = 5e-25 Identities = 218/313 (70%), Gaps = 7/313 (2%) Strand=Plus/Minus Query 6272 TTCTTTTCCCTGATGTCTTGGAAGCTGAGAGAGTATTTCGTGGTGACGGAGTACTTGATA 6331 ||||| || || ||| |||| ||| ||||||||||| ||| | || || ||| ||||| Sbjct 2777388 TTCTTCTCTCTCATGAGCTGGAGGCTAAGAGAGTATTTTGTGATAACCGAATACCTGATA 2777329 Query 6332 AAGGAGCATTACGTTCCTTTATTTAATGGGCTGACAATGGCTGATGACATGACAACAGTT 6391 || ||| | || || ||||| || || | || ||||| |||||| | || ||| | Sbjct 2777328 AAATTGCACTTTGTGCCATTATTCAAGGGAATCACCATGGCAGATGACTTAACTACACTC 2777269 Query 6392 ATATCCAAGCTGATGGATAGAACGCAGGGGCAAGGAGGGAGTGATTATTCTCA--AATCT 6449 ||| ||||| | |||| | | ||| |||| || ||||| || | || | Sbjct 2777268 ATAAAGAAGCTTTTAGATACATCCTCGGGACAAGCTTTGACGGATTA-TCGGAGTTATTT 2777210 Query 6450 GTATTGCAAATCATATAGATTATGAGAAGTGGAACAATCACCAAAGAAAGGA--TGCCAC 6507 ||| || ||||||||||||||||| || ||||| ||||||| | |||| | | Sbjct 2777209 CTATAGCTAATCATATAGATTATGAAAAATGGAATGCTCACCAACG--AGGAACAGGGAA 2777152 Query 6508 TGGTCCAGTTTTCAAAGTCATGGGTCAGTTTTTGGGGTATCCCAATTTAATATACCGGAC 6567 || |||| |||||| ||||||||||| ||||| || ||||| | |||| | | || Sbjct 2777151 TGATCCATGTTTCAAGGTCATGGGTCAATTTTTAGGTCTGCCCAACTCAATACTCAGAAC 2777092 Query 6568 ACATGAATTCTTT 6580 ||||||| ||| Sbjct 2777091 TAATGAATTTTTT 2777079 >seq40 Length=949583 Score = 116 bits (128), Expect = 3e-22 Identities = 216/316 (68%), Gaps = 1/316 (0%) Strand=Plus/Plus Query 6265 AGGAAGATTCTTTTCCCTGATGTCTTGGAAGCTGAGAGAGTATTTCGTGGTGACGGAGTA 6324 ||||||||||||||| || ||| |||| || ||||||||||| || | |||||||| Sbjct 1658 AGGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTA 1717 Query 6325 CTTGATAAAGGAGCATTACGTTCCTTTATTTAATGGGCTGACAATGGCTGATGACATGAC 6384 || || || | ||||| ||||| | || || ||| | |||||||| ||||| | || Sbjct 1718 TTTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAAC 1777 Query 6385 AACAGTTATATCCAAGCTGATGGATAGAACGCAGGGGCAAGGAGGGAGTGATTATTCTCA 6444 ||| | | | || || |||||| | || ||||| | ||| || Sbjct 1778 AACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGAT 1837 Query 6445 AATCTGTATTGCAAATCATATAGATTATGAGAAGTGGAACAATCACCAAAGAAAGGATGC 6504 |||| ||| || ||| ||||||||||||| || ||||| || |||||| || | Sbjct 1838 CATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAGAGGG 1897 Query 6505 CACTGGTCCAGTTTTCAAAGTCATGGGTCAGTTTTTGGGGTATCCCAATTTAATATACCG 6564 || | ||| |||| ||||| ||||| | ||||| || | || || ||||| | Sbjct 1898 AAC-GATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTAAG 1956 Query 6565 GACACATGAATTCTTT 6580 || |||||||||||| Sbjct 1957 AACGCATGAATTCTTT 1972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35314223843728