Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_028239.1 Length=16133 Score E Sequences producing significant alignments: (Bits) Value seq40 158 1e-34 seq18 131 2e-26 >seq40 Length=949583 Score = 158 bits (174), Expect = 1e-34 Identities = 257/363 (71%), Gaps = 9/363 (2%) Strand=Plus/Plus Query 11327 GGGAGGtttttttCATTAATGAGCTGGGAGCTGAGGGAGTACTTCGTATTTACTGAATAC 11386 || || || ||||| ||||||| ||| || || ||||| || ||| |||| || || Sbjct 1659 GGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTAT 1718 Query 11387 CTAATTAAAGAGCATTTTGTACCATTATTTAAGGGTCTGACTATGGCTGATGACTTACAA 11446 |||||||| | |||| ||| || | || || || | || ||||| ||||| ||| | Sbjct 1719 TTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAACA 1778 Query 11447 ACAGTTATTAAGAAGATGATAGATGTGTCTTCTGGTCAAGGCACTGA--GACATATGAGA 11504 || | | ||||| || | ||| || || |||||||| ||| ||| || | || Sbjct 1779 ACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGT-CTGGCTGAC-TACGGGA 1836 Query 11505 ATATCACCATTGCAAATAACATAGATTATGAGAAATGGAATAATTATCAAAGGTATGA-A 11563 ||| | || || ||| | ||||||||||| ||||||||| ||||||| | || | Sbjct 1837 TCATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAG--AGGAGA 1894 Query 11564 TCTAATCATGCAATATTCACAGTGATGGGGCAATTTTTAGGGTATCCAAAGTTAATTGCA 11623 || || | | || | ||||||||| |||||||||| | ||||| ||||| | | Sbjct 1895 GGGAACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTA 1954 Query 11624 AGAACTCATGAGTTTTTTGAGAAAAGCCTAGTTTATTATAACCAAAGACCTGAC--TTAA 11681 ||||| ||||| || ||| | |||| || | |||||||| |||||||||||| |||| Sbjct 1955 AGAACGCATGAATTCTTTAATAAAATTATATTCTATTATAATCAAAGACCTGACTTTTAA 2014 Query 11682 TGA 11684 ||| Sbjct 2015 TGA 2017 >seq18 Length=5623067 Score = 131 bits (144), Expect = 2e-26 Identities = 245/354 (69%), Gaps = 7/354 (2%) Strand=Plus/Minus Query 11328 GGAGGtttttttCATTAATGAGCTGGGAGCTGAGGGAGTACTTCGTATTTACTGAATACC 11387 || |||| || || | ||||||||| ||| || ||||| || || | || ||||||| Sbjct 2777393 GGGGGTTCTTCTCTCTCATGAGCTGGAGGCTAAGAGAGTATTTTGTGATAACCGAATACC 2777334 Query 11388 TAATTAAAGAGCATTTTGTACCATTATTTAAGGGTCTGACTATGGCTGATGACTTACAAA 11447 | || ||| ||| ||||| |||||||| ||||| | || ||||| ||||||||| | Sbjct 2777333 TGATAAAATTGCACTTTGTGCCATTATTCAAGGGAATCACCATGGCAGATGACTTAACTA 2777274 Query 11448 CAGTTATTAAGAAGATGATAGATGTGTCTTCTGGTCAAGGCACTGAGACAT-ATGAGAAT 11506 || | || |||||| | ||||| || || || |||| | ||| || || || | Sbjct 2777273 CACTCATAAAGAAGCTTTTAGATACATCCTCGGGACAAG-CTTTGACGGATTATCGGAGT 2777215 Query 11507 -ATCACCATTGCAAATAACATAGATTATGAGAAATGGAATAATTATCAAAGGTATGAATC 11565 || | || || ||| | ||||||||||| ||||||||| | | ||| | | ||| Sbjct 2777214 TATTTCTATAGCTAATCATATAGATTATGAAAAATGGAATGCTCACCAACG--AGGAACA 2777157 Query 11566 T--AATCATGCAATATTCACAGTGATGGGGCAATTTTTAGGGTATCCAAAGTTAATTGCA 11623 ||| || || |||| || ||||| ||||||||||| || || | ||| Sbjct 2777156 GGGAATGATCCATGTTTCAAGGTCATGGGTCAATTTTTAGGTCTGCCCAACTCAATACTC 2777097 Query 11624 AGAACTCATGAGTTTTTTGAGAAAAGCCTAGTTTATTATAACCAAAGACCTGAC 11677 |||||| |||| |||||| |||| |||||||||| ||| |||| ||| Sbjct 2777096 AGAACTAATGAATTTTTTAGTAAAATTACTTTTTATTATAATCAACGACCAGAC 2777043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 51505736728736