Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_028241.1 Length=14478 Score E Sequences producing significant alignments: (Bits) Value seq40 159 3e-35 >seq40 Length=949583 Score = 159 bits (176), Expect = 3e-35 Identities = 367/544 (67%), Gaps = 14/544 (3%) Strand=Plus/Plus Query 9676 GGACGATTCTTTTCCTTAATGTCCTGGGAATTAAGGGAATATTTCGTTGTAACTGAATTA 9735 ||| |||||||||| ||||| ||| | |||| || ||||| || | || || | Sbjct 1659 GGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTAT 1718 Query 9736 CTGATTAAACAACATTATGTAAAGTTGTTCAAAGGTTTGACCATGGCAGATGATCTCCAA 9795 | |||||| |||||||||| | |||||||| | || |||||||||||| | | Sbjct 1719 TTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAACA 1778 Query 9796 ACTGTCATAAAGAAAATGCTTGATACCTCACATGGTCAGGGAACCCGTACATATGATGCC 9855 ||| | | ||||||| |||| ||||| ||| ||||| || | || | | Sbjct 1779 ACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGATC 1838 Query 9856 ATCACCATTGCCAATAACATAGACTATGAAAAATGGAATAATTATCAGAGAATGGA-ATC 9914 ||| | || || ||| | ||||| ||||||||||||||| |||| ||| ||| | Sbjct 1839 ATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGA--GGAGAGG 1896 Query 9915 AAACGGTCCTGTATTCAGAGTAATGGGTCAATTCTTGGGATATCCTAATTTGATACTCAG 9974 |||| |||| | || | ||| ||||| |||| || |||| || || || || | || Sbjct 1897 GAACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTAAG 1956 Query 9975 GACCCATGAGTTTTTTCAGAAAAGTTTAATTTATTATAATCAAAGACCTGA--TTTGATG 10032 || ||||| || ||| | |||| | || | |||||||||||||||||||| ||| ||| Sbjct 1957 AACGCATGAATTCTTTAATAAAATTATATTCTATTATAATCAAAGACCTGACTTTTAATG 2016 Query 10033 AGAGTAGTTGGGAAAAGTGCTATGAACAGTACTAAA---CATATCGTGTGCTGGGAAGGG 10089 | | ||| | || || || | | | ||| | |||||||| |||||| | || Sbjct 2017 A---TTGTTCGAAATGGTCGAATTGAAAATTCTACACGGCATATCGTATGCTGGAATGGT 2073 Query 10090 CAG-CTGGGTGGTTTAGAAGGGCTGAGACAAAAGGGGTGGAGTGTTGTCAATTATTTAAT 10148 ||| | || || ||||||| | || ||| || ||| | || |||||| || Sbjct 2074 CAGTGTAGGGGGCCAAGAAGGGATTAGGCAACGAGGATGGTGCGTGGTCAATGCATTGGC 2133 Query 10149 GATTGAACGAGAATCTAAAG-TAAGAAACACCTTAGTGAAAGTGTTGGCTCAGGGAGACA 10207 || ||| | ||| | ||| | || |||||| ||| | | ||||| || || || | Sbjct 2134 AATAGAAAGGGAAAGTCAAGATCAG-AACACCAAAGTAAGCCTTTTGGCACAAGGGGATA 2192 Query 10208 ACCA 10211 |||| Sbjct 2193 ACCA 2196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46209887183131