Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_028255.1 Length=11003 Score E Sequences producing significant alignments: (Bits) Value seq40 159 2e-35 seq18 118 7e-23 >seq40 Length=949583 Score = 159 bits (176), Expect = 2e-35 Identities = 249/354 (70%), Gaps = 3/354 (1%) Strand=Plus/Plus Query 6207 GGAAGATTCTTTTCCTTGATGTCTTGGAAATTACGTGAATATTTTGTAATCACGGAATAT 6266 |||||||||||||| | ||| |||| | || | || ||||||||||| ||||| ||| Sbjct 1659 GGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTAT 1718 Query 6267 CTTATCAAAACACACTTTGTCCCCATGTTCAAGGGACTAACCATGGCAGATGATCTAACT 6326 | || ||| ||| | ||| ||| | ||||| || | || |||||||||||| |||| Sbjct 1719 TTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAACA 1778 Query 6327 GCTGTCATCaaaaaaaTGTTGGATACATCCTCAGGTCAAGGATTGGACAATTACGAGTCC 6386 || | | || ||| || ||||||| || ||||||||||| ||| | |||| | | Sbjct 1779 ACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGATC 1838 Query 6387 ATTTGTATCGCGAATCACATTGATTATGAGAAATGGAACAACCATCAACGCAAGGA-ATC 6445 || | ||| || ||| | || |||||||| |||||||| ||||||| | |||| | Sbjct 1839 ATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAG--AGGAGAGG 1896 Query 6446 CAATGGGCCTGTATTTCGTGTGATGGGACAGTTCCTAGGATACCCAAACCTGATTGAGAG 6505 || | ||| | ||| |||||||| | || |||||| |||||| | || | || Sbjct 1897 GAACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTAAG 1956 Query 6506 GACACACGAATTCTTCGAGAAGAGCTTGATCTACTATAATGGACGTCCAGACTT 6559 || || |||||||| | || | | |||| |||||| | | || ||||| Sbjct 1957 AACGCATGAATTCTTTAATAAAATTATATTCTATTATAATCAAAGACCTGACTT 2010 >seq18 Length=5623067 Score = 118 bits (130), Expect = 7e-23 Identities = 138/184 (75%), Gaps = 3/184 (2%) Strand=Plus/Minus Query 6243 GAATATTTTGTAATCACGGAATATCTTATCAAAACACACTTTGTCCCCATGTTCAAGGGA 6302 || |||||||| || || ||||| || || ||| |||||||| || | ||||||||| Sbjct 2777358 GAGTATTTTGTGATAACCGAATACCTGATAAAATTGCACTTTGTGCCATTATTCAAGGGA 2777299 Query 6303 CTAACCATGGCAGATGATCTAACTGCTGTCATCaaaaaaaTGTTGGATACATCCTCAGGT 6362 | |||||||||||||| ||||| | |||| || || | || ||||||||||| || Sbjct 2777298 ATCACCATGGCAGATGACTTAACTACACTCATAAAGAAGCTTTTAGATACATCCTCGGGA 2777239 Query 6363 CAAGGATTGGACAATTA--CGAGTCCATTTGTATCGCGAATCACATTGATTATGAGAAAT 6420 |||| ||| |||| |||| |||| ||| || ||||| || |||||||| |||| Sbjct 2777238 CAAGCTTTGACGGATTATCGGAGT-TATTTCTATAGCTAATCATATAGATTATGAAAAAT 2777180 Query 6421 GGAA 6424 |||| Sbjct 2777179 GGAA 2777176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35093429946916