Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_031236.1 Length=11165 Score E Sequences producing significant alignments: (Bits) Value seq40 102 6e-18 seq18 93.3 3e-15 >seq40 Length=949583 Score = 102 bits (112), Expect = 6e-18 Identities = 604/951 (64%), Gaps = 30/951 (3%) Strand=Plus/Plus Query 6283 GGAAGATTCTTCTCCCTGCTTTCTTGGGTACTTAGAGAGTATTTTGTCGTAACGGAATAT 6342 ||||||||||| || || | |||| ||| |||||||||||||| | ||||| ||| Sbjct 1659 GGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTAT 1718 Query 6343 CTTATAAAGATCCATTTCCTCCCTCTTTTTAAGGGACTGACTATGGCTGATGACTTGACT 6402 | || || |||| | || ||||| || || | || ||||| ||||| || || Sbjct 1719 TTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAACA 1778 Query 6403 ACCCTCACCAAGAAGATGCTGGACACCTCCTCGGGTCAAGGGTTAAGTGGATACGACAAA 6462 || | || ||||| ||||||| || || || |||||||| | || |||| | Sbjct 1779 ACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGATC 1838 Query 6463 ATTAGTTATGCTAACCATTTGGATTATGAGAAGTGGAACAATTATCAAAGGATTGAGTCC 6522 || | ||||| || | |||||||| || ||||| ||||||| ||| Sbjct 1839 ATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAGAG-GG 1897 Query 6523 AACGGACCGGTCTTCAAAGTCATGGGACAGTTTCTGGGGTATCCAAATCTTATATATC-- 6580 |||| || | || ||||| ||||| | ||| | || | ||||| |||| ||| Sbjct 1898 AACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAA-CTTA---ATCGT 1953 Query 6581 --GAACACATGAGTTCTTCCAGAAAAGCATCATTTACTACAATGATAGGCCGGA--TTTG 6636 |||| ||||| ||||| | |||| || | || || ||| | || || || ||| Sbjct 1954 AAGAACGCATGAATTCTTTAATAAAATTATATTCTATTATAATCAAAGACCTGACTTTTA 2013 Query 6637 ATGGTAGTAGAGAACGGGATGATAGTGAA---TC-GCACTGAAGAGAGAGTAGTGTGGAA 6692 ||| | || ||| || || | |||| || ||| | | | ||| ||||| Sbjct 2014 ATGATTGT-TCGAAATGGTCGA-ATTGAAAATTCTACACGG--CATATCGTATGCTGGAA 2069 Query 6693 CGGACA-AGCTGGGGGATTGGAAGGATTAAGGCAGAAAGGATGGAGTGTTTTGAATGCAT 6751 || || | ||||| ||||| | ||||| ||||||| | || | ||||||| Sbjct 2070 TGGTCAGTGTAGGGGGCCAAGAAGGGATTAGGCAACGAGGATGGTGCGTGGTCAATGCAT 2129 Query 6752 TATCGATTGCCAGAGAGGGACGAGATAGAAACACCAAGCTTGCTCTTTTGGCTCAAGGGG 6811 | | || | || || | | |||| |||||||| | |||||||| ||||||| Sbjct 2130 TGGCAATAGAAAGGGAAAGTCAAGATCAGAACACCAAAGTAAGCCTTTTGGCACAAGGGG 2189 Query 6812 ACAACCAAATTATCTTCACCAACTACAAGATGCAGGATTACAGAGATGAAAGAGAGCT-- 6869 | ||||| |||| | ||||| || ||||| | || ||| ||| | ||||| Sbjct 2190 ATAACCAGGTTATATGTACCAATTATGTATTGCAGAAATATAGAACAGAACGTGAGCTAC 2249 Query 6870 TAAGTGTAATCTGGAACGAATCAGGATCAATAACGATCAGATTATGAAGTCCATAGAAAG 6929 ||| | | ||| | || | | ||||| |||| ||| | |||| | Sbjct 2250 TAA-TCAACATTGGTA-GAGTAGTGGAAAATAATTCAGAGATCATGCATCGAATAGTGAA 2307 Query 6930 TGGAATAATAAAGCTTGGACTGAAAATCAATCAAGACGAGACAATGCAATCTGCTGATTT 6989 ||||| || ||| | || | | |||||| | ||||| | || || || || |||| Sbjct 2308 AGGAATTATTAAGTTAGGTTTAAGTATCAATTATGACGAAATCATTCAGTCGGCAGATTA 2367 Query 6990 CACCAATTATGGTAAAATACCGATAATCCGAGGAAACATATACCCATTAGAGACAAAAAG 7049 | | |||||| ||||| || ||| | || ||| ||| ||||| || ||| | Sbjct 2368 TATCTTTTATGGAAAAATCCCCATAGTTAGATAAAATATAATGGTTTTAGAAACCAAACG 2427 Query 7050 ATGGTCTAG-GGCTGCTTGTGTGACTAATGATCAGTTACCCAGCCTAGGAAATGTTATGT 7108 || ||||| | | | ||| ||||||||||| | || || |||||||| | Sbjct 2428 GTGATCTAGTTGTTCAATTAGTG-CTAATGATCAGATGCCATTTAATGGTAATGTTATCT 2486 Query 7109 CTACTGTCAGTTCCAATGCACTGACGATAGCATACTCTTCTTTGTCTCCTAAGAATAC-- 7166 | || | |||| |||||| | || || || | ||| | || || | ||||| Sbjct 2487 CAACAATAGGTTCTAATGCATTAACTATTGCTCATCATTCGGTCTCCCCAATTAATACCA 2546 Query 7167 --AATAGTGCACTTGAATTGGGCCGGGAACTTTGTTAGAAATTTAATTGAT 7215 | || | || | |||| | ||||| ||| |||||||| | ||||| Sbjct 2547 TAATTAATACATTATAATTTTGTTGGGAATTTTATTAGAAATCTTCTTGAT 2597 >seq18 Length=5623067 Score = 93.3 bits (102), Expect = 3e-15 Identities = 137/191 (72%), Gaps = 5/191 (3%) Strand=Plus/Minus Query 6313 CTTAGAGAGTATTTTGTCGTAACGGAATATCTTATAAAGATCCATTTCCTCCCTCTTTTT 6372 || |||||||||||||| |||| ||||| || ||||| | || || | || | || Sbjct 2777364 CTAAGAGAGTATTTTGTGATAACCGAATACCTGATAAAATTGCACTTTGTGCCATTATTC 2777305 Query 6373 AAGGGACTGACTATGGCTGATGACTTGACTACCCTCACCAAGAAGATGCTGGACACCTCC 6432 |||||| | || ||||| |||||||| ||||| |||| |||||| | | || || ||| Sbjct 2777304 AAGGGAATCACCATGGCAGATGACTTAACTACACTCATAAAGAAGCTTTTAGATACATCC 2777245 Query 6433 TCGGGTCAAGGGTTAAGTGGATACGACAAAATTAGTTAT---GCTAACCATTTGGATTAT 6489 ||||| |||| || | |||| | | ||| || | ||||| ||| | |||||| Sbjct 2777244 TCGGGACAAGCTTTGA-CGGAT-TATCGGAGTTATTTCTATAGCTAATCATATAGATTAT 2777187 Query 6490 GAGAAGTGGAA 6500 || || ||||| Sbjct 2777186 GAAAAATGGAA 2777176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35611815617692