Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_031240.1 Length=11541 Score E Sequences producing significant alignments: (Bits) Value seq40 143 2e-30 seq18 91.5 1e-14 >seq40 Length=949583 Score = 143 bits (158), Expect = 2e-30 Identities = 245/350 (70%), Gaps = 9/350 (3%) Strand=Plus/Plus Query 6483 GAGGAAGATTTTTCGCTTTAATGTCTTGGGAGATTAGAGATTATTTTGTAATGACAGAAT 6542 |||||||||| || || ||||| |||| | ||||| ||||||||||| || || | Sbjct 1657 GAGGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGT 1716 Query 6543 ATTTAATTAAAACTCATTTTGTGCCTCTCTTTGACGGATTAACAATGGCTGATGATCTAA 6602 ||||||||||| |||| ||| || || || | || | |||||||| |||||| ||| Sbjct 1717 ATTTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAA 1776 Query 6603 CAACTGTTATCGGAAAGATTTTGCGAAACACTGAA---GGACAAGGAGAAGATGGATATG 6659 ||||| | | ||||| |||| | ||| | || ||||| | || || | Sbjct 1777 CAACTTTGAC---AAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACG 1833 Query 6660 AAAGTGTCACCTTCGCAGATCATATAGATTACGAAAAATGGAACAATCATCAGAGAGGAG 6719 | || | | || || |||||||||| ||||||||||| ||||| ||||||| Sbjct 1834 GGATCATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAG 1893 Query 6720 AGGCAAATAATCCAACTTTCAAAGTTATGGGACAATTTTTAGGATACCCCAATTTAATTC 6779 ||| || |||| ||| ||||| ||||| |||||||||||| || || ||||| Sbjct 1894 AGG-GAACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCG 1952 Query 6780 AGAGAACTCATGAAATATTTGA-GAAATCATGGATATATTATAATCGAAG 6828 ||||| |||||| | ||| | |||| || | |||||||||| ||| Sbjct 1953 TAAGAACGCATGAATTCTTTAATAAAATTAT-ATTCTATTATAATCAAAG 2001 >seq18 Length=5623067 Score = 91.5 bits (100), Expect = 1e-14 Identities = 195/285 (68%), Gaps = 5/285 (2%) Strand=Plus/Minus Query 6518 AGAGATTATTTTGTAATGACAGAATATTTAATTAAAACTCATTTTGTGCCTCTCTTTGAC 6577 ||||| |||||||| || || ||||| | || ||| || |||||||| | || | Sbjct 2777361 AGAGAGTATTTTGTGATAACCGAATACCTGATAAAATTGCACTTTGTGCCATTATTCAAG 2777302 Query 6578 GGATTAACAATGGCTGATGATCTAACAACTGTTATCGGAAAGATTTTGCGAAACA-CTGA 6636 ||| | || ||||| ||||| |||| || | || ||| |||| || ||| | Sbjct 2777301 GGAATCACCATGGCAGATGACTTAACTACACTCATAAAGAAGCTTTTA-GATACATCCTC 2777243 Query 6637 AGGACAAGGAGAAGATGGAT-ATGAAAGTGTCACCT-TCGCAGATCATATAGATTACGAA 6694 ||||||| || |||| || ||| || | || ||||||||||||| ||| Sbjct 2777242 GGGACAAGCTTT-GACGGATTATCGGAGTTATTTCTATAGCTAATCATATAGATTATGAA 2777184 Query 6695 AAATGGAACAATCATCAGAGAGGAGAGGCAAATAATCCAACTTTCAAAGTTATGGGACAA 6754 |||||||| ||| || ||||| | ||| ||||| |||||| || ||||| ||| Sbjct 2777183 AAATGGAATGCTCACCAACGAGGAACAGGGAATGATCCATGTTTCAAGGTCATGGGTCAA 2777124 Query 6755 TTTTTAGGATACCCCAATTTAATTCAGAGAACTCATGAAATATTT 6799 |||||||| ||||| | ||| | |||||| ||||| | ||| Sbjct 2777123 TTTTTAGGTCTGCCCAACTCAATACTCAGAACTAATGAATTTTTT 2777079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36814982359740