Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_031268.1 Length=8683 Score E Sequences producing significant alignments: (Bits) Value seq40 104 1e-18 >seq40 Length=949583 Score = 104 bits (114), Expect = 1e-18 Identities = 364/557 (65%), Gaps = 16/557 (3%) Strand=Plus/Plus Query 3708 GGAAGATTTTTCTCTCTGATGACCTGGGATCTGAGAGAGTATTTTGTATCCACTGAGTAC 3767 |||||||| || ||||| |||| ||| || ||||||||||||||| || ||||| Sbjct 1659 GGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTAT 1718 Query 3768 CTCATTAAGATGTATTATGTTCCCTTGTTTGAAGGACTCACCATGGCAGATGATCTAAAA 3827 | ||||| ||||||||||| | || |||| | || |||||||||||| ||| | Sbjct 1719 TTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAACA 1778 Query 3828 TCTGTAACACGAAAGATACTGGAGTGTACCACTGGTCACGGTCAGATCGGTTACAAGGTA 3887 || | ||| || | ||||| | | | ||||| |||| | | | || | | Sbjct 1779 ACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTC---TGGCTGACTACGGG 1835 Query 3888 GTCAGCT---TTGCTAATCACTTAGACTATGAGAAATGGAACAATCATCAGAGGAAAAAG 3944 ||| || | |||||| | |||| ||||| |||||||| ||||| || | || Sbjct 1836 ATCATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAGAG 1895 Query 3945 TCAACCTTCCCCGTCTTCAAGGTTATGGGTCAGTTCCTTGGGATGCCAAACCTATTCGCT 4004 ||| | || | || || || ||||| | || | || |||||||| || ||| Sbjct 1896 GGAACGAT-CCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTA 1954 Query 4005 CAAACTCATGATTTCTTCGAACAGAGTTTTGTT-TATTATGGTGAACGTCCTGA--TCTT 4061 ||| ||||| ||||| || | | || | || |||||| | || | ||||| | | Sbjct 1955 AGAACGCATGAATTCTT-TAATAAAATTATATTCTATTATAATCAAAGACCTGACTTTTA 2013 Query 4062 ATGACTGTTCAAGGAGGAAAGATCGTGAACAATACAGAACATATTGTATGTTGGAACGGT 4121 |||| ||||| | || || | || |||| ||||| ||||| ||||| ||| Sbjct 2014 ATGATTGTTCGAAATGGTCGAATTGAAAATTCTACACGGCATATCGTATGCTGGAATGGT 2073 Query 4122 CA-ACTGGGCGGACTTGAAGGACTACGACAAAAGGGATGGAGCGTCCTCAATCTTCTCGT 4180 || | || || | ||||| | | ||| |||||| |||| ||||| | | Sbjct 2074 CAGTGTAGGGGGCCAAGAAGGGATTAGGCAACGAGGATGGTGCGTGGTCAATGCATTGGC 2133 Query 4181 CATCCTA--CGAGAGTCGAAGATCCGCAACACCCAAGTCAGAGTGCTTGCTCAAGGTGAC 4238 || | || |||| |||||| | |||||| |||| || | | || ||||| || Sbjct 2134 AATAGAAAGGGAAAGTC-AAGATCAG-AACACCAAAGTAAGCCTTTTGGCACAAGGGGAT 2191 Query 4239 AACCAAGTGATTTGCAC 4255 ||||| || || || || Sbjct 2192 AACCAGGTTATATGTAC 2208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27669635155556