Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_031278.1 Length=12247 Score E Sequences producing significant alignments: (Bits) Value seq40 109 4e-20 >seq40 Length=949583 Score = 109 bits (120), Expect = 4e-20 Identities = 218/320 (68%), Gaps = 5/320 (2%) Strand=Plus/Plus Query 7348 GATTCTTTTCTCTGATGTCCTGGGATTTACGAGATTATTTTGTTATAACGGAGTATCTGA 7407 ||||||||||||| ||| ||| || |||| |||||||| || ||||||||| | | Sbjct 1663 GATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTATTTAA 1722 Query 7408 TTAAAACCCATTTTGTTCCCCTCTTTTATGGACTGACAATGGCTGATGATATGACAACAG 7467 ||||| |||| ||||||||| || | || | |||||||| |||||| | ||||| Sbjct 1723 TTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAACAACTT 1782 Query 7468 TAGTACGCAAGATGATGGAAA--ACACCAGTGGACAGGGTTCTGATGATTATGAGCACAT 7525 | | || || |||| | || || || || ||| | ||| || | | ||| Sbjct 1783 TGACAAAGAAATTGCTGGATACTTCATCA--GGTCAAGGTCTGGCTGACTACGGGATCAT 1840 Query 7526 AGGAATTGCCAATCACTTGGATTATGAAAAGTGGAATAATCACCAAAGATACCAATCTAC 7585 || || ||| | | ||||||||||| |||||| || |||||| | || Sbjct 1841 CTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAGAGGGAAC 1900 Query 7586 AGAACCTGTATTCACAGTCATGGGCAAATTCCTCGGATATCCGAATTTAATTGCGAGAAC 7645 || ||| | || | ||| ||||||||||| | |||| || || ||||| | ||||| Sbjct 1901 -GATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTAAGAAC 1959 Query 7646 TCATGAGTTCTTCGAGAAAA 7665 ||||| ||||| | |||| Sbjct 1960 GCATGAATTCTTTAATAAAA 1979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39074119912628