Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_031282.1 Length=12651 Score E Sequences producing significant alignments: (Bits) Value seq40 116 3e-22 seq18 100 2e-17 >seq40 Length=949583 Score = 116 bits (128), Expect = 3e-22 Identities = 215/314 (68%), Gaps = 1/314 (0%) Strand=Plus/Plus Query 7786 GGGAGATTCTTCTCTCTTATGTCGTGGCAACTCAGGGATTACTTTGTAATAACCGAATAT 7845 || |||||||| ||||| ||| |||| ||| || || || |||||||| || || ||| Sbjct 1659 GGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTAT 1718 Query 7846 TTGATCAAGCAACACTTTGTCCCATTATTCGACGGTTTGACTATGGCAGATGATCTCACG 7905 || || || |||| | ||| || | ||| | || | || |||||||||||| | || Sbjct 1719 TTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAACA 1778 Query 7906 ACTGTTATCAAGAAAATGATGGACAACGCAAATGGTCAAGGATTAGATACCTATGATTAT 7965 ||| | | |||||| || |||| | || |||||||| | | | ||| | Sbjct 1779 ACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGATC 1838 Query 7966 ATATCCATAGCCAATCATATAGATTATGAAAAGTGGAATAATCATCAGAGGAAAGAATCC 8025 || || ||||| ||| |||||||||||||||| |||||| ||||| || ||| Sbjct 1839 ATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAGAGGGA 1898 Query 8026 ACTACCCCAGTATTTAAGGTAATGGGTCAATTCCTAGGTTACCCTAACCTTATTAGCCGA 8085 || | || | ||||| || ||||| |||| |||| | || ||| | || || Sbjct 1899 ACGA-TCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTAAGA 1957 Query 8086 ACTCACGAATTCTT 8099 || || |||||||| Sbjct 1958 ACGCATGAATTCTT 1971 >seq18 Length=5623067 Score = 100 bits (110), Expect = 2e-17 Identities = 391/603 (65%), Gaps = 35/603 (6%) Strand=Plus/Minus Query 7792 TTCTTCTCTCTTATGTCGTGGCAACTCAGGGATTACTTTGTAATAACCGAATATTTGATC 7851 ||||||||||| ||| ||| || || || || ||||| ||||||||||| |||| Sbjct 2777388 TTCTTCTCTCTCATGAGCTGGAGGCTAAGAGAGTATTTTGTGATAACCGAATACCTGATA 2777329 Query 7852 AAGCAACACTTTGTCCCATTATTCGACGGTTTGACTATGGCAGATGATCTCACGACTGTT 7911 || |||||||| ||||||||| | || | || ||||||||||| | || || | Sbjct 2777328 AAATTGCACTTTGTGCCATTATTCAAGGGAATCACCATGGCAGATGACTTAACTACACTC 2777269 Query 7912 ATCAAGAAAATGATGGACAACGCAAATGGTCAAGGATT---AGATACCTAT--GATTATA 7966 || ||||| | | || | | || |||| || ||| ||| || | || Sbjct 2777268 ATAAAGAAGCTTTTAGATACATCCTCGGGACAAGCTTTGACGGAT---TATCGGAGT-TA 2777213 Query 7967 TATCCATAGCCAATCATATAGATTATGAAAAGTGGAATAATCATCA--GAGGAA---AGA 8021 | || ||||| |||||||||||||||||||| |||||| ||| || |||||| || Sbjct 2777212 TTTCTATAGCTAATCATATAGATTATGAAAAATGGAATGCTCACCAACGAGGAACAGGGA 2777153 Query 8022 ATCCACTACCCCAGTATTTAAGGTAATGGGTCAATTCCTAGGTTACCCTAACCTTATTAG 8081 || | || || || ||||| ||||||||||| ||||| || ||| || Sbjct 2777152 AT----GATCCATGT-TTCAAGGTCATGGGTCAATTTTTAGGTCTGCCCAACTCAATACT 2777098 Query 8082 CCGAACTCACGAATTCTT---CGAAAGGAGTTTAATTTACCATGGCGGGAGAACAGACC- 8137 | ||||| | ||||| || ||| | || |||| || || |||||| Sbjct 2777097 CAGAACTAATGAATTTTTTAGTAAAATTACTT---TTTATTATAATCAACGACCAGACCC 2777041 Query 8138 -TAATGAGGATCGTCAATGGTGAAGTAGAAAATAATTCGGATATCCGAGTATGTTGGAAT 8196 |||| || ||||||| |||||||| | ||| |||||||||||||| Sbjct 2777040 GATATGATTATGAATAATGGTGTCATAGAAAATTTGACAGATCAGAGAGTATGTTGGAAT 2776981 Query 8197 GGACAGAAAGGAGGTCTGGAAGGATTGAGACAGAAAGGTTGGAGCATTCTAAACCTTCTA 8256 ||||| ||||| | || ||| | |||| |||||| | | | || |||| Sbjct 2776980 GGACAATTGGGAGGGCAAGAGGGAATCGGACAACGAGGTTGTTGTGTCGTGAATGCTCTA 2776921 Query 8257 CTGATTAAAAGAGAAGGGTCATCCAGAAACACATCTATCAAAACTT------TAGCTCAA 8310 || || | ||| |||| | || ||||| | | ||| | |||||| Sbjct 2776920 GCAATAGAACGTGAA-TGTCA-GGACCAAAACATCAAGGTGAGCTTACTTACTTGCTCAA 2776863 Query 8311 GGGGATAATCAAGTCATCTGCACCCAGTATCGTCTACAGAAATACAGAACACAAGAAGAA 8370 || ||||||||||| ||||| || | ||| | | ||||||| ||||| | | ||| || Sbjct 2776862 GGAGATAATCAAGTTATCTGTACAAATTATGTTTTGCAGAAATTCAGAAGAGACGAAAAA 2776803 Query 8371 ATG 8373 || Sbjct 2776802 CTG 2776800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40366884178020