Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_031301.1 Length=11103 Score E Sequences producing significant alignments: (Bits) Value seq40 143 2e-30 seq18 105 5e-19 >seq40 Length=949583 Score = 143 bits (158), Expect = 2e-30 Identities = 243/348 (70%), Gaps = 3/348 (1%) Strand=Plus/Plus Query 6323 TTCTTTTCTCTAATGTCATGGATGTTGCGAGAATATTTTGTGATAACAGAATATTTAATC 6382 ||||||||||||||| ||| | |||| |||||||| || || || |||||||| Sbjct 1665 TTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTATTTAATT 1724 Query 6383 AAGGAGAATTACGTTCCTCTGTTTAGTGGATTGACAATGGCTGATGATTTGACAACTGTC 6442 || | |||| ||||| || || | || | |||||||| |||||||| |||||| | Sbjct 1725 AAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAACAACTTTG 1784 Query 6443 ATATCAAAATTGTTAGATA-GGAGTCAGGGACAAGGTGGTAAAGATTACACTAATATTTG 6501 | | |||||| | |||| ||| || |||||| || ||| | || | Sbjct 1785 ACAAAGAAATTGCTGGATACTTCATCA-GGTCAAGGTCTGGCTGACTACGGGATCATCTC 1843 Query 6502 TATCGCAAATCATATTGACTATGAGAAATGGAACAACCATCAAAGAAAAGCTGCAACTGA 6561 ||| || ||| |||| || ||||| |||||||| |||||||||| || | ||| || Sbjct 1844 TATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAGAGGGAAC-GA 1902 Query 6562 TCCAGTTTTCAAGGTCATGGGAGAGTTCTTAGGATATCCCAACTTATTCACAAGAACTCA 6621 ||| |||| || || ||||| | || ||||||| || |||||| || |||||| || Sbjct 1903 TCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTAAGAACGCA 1962 Query 6622 CGAATTCTTTCAAGAAAGTCTAATTTACTACAATGGACGACCAGATTT 6669 ||||||||| | ||| | || | || || ||| | |||| || || Sbjct 1963 TGAATTCTTTAATAAAATTATATTCTATTATAATCAAAGACCTGACTT 2010 Score = 86.0 bits (94), Expect = 4e-13 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 7724 CCTTTATTCCCTCGATTTTTAAGTGAATTTAAATCTGCAACATTTATTGGGATTACTGAA 7783 |||||||| ||| | ||||| |||||||||||| |||||| | |||||| | ||||||| Sbjct 928 CCTTTATTTCCTAGGTTTTTGAGTGAATTTAAAAATGCAACTTATATTGGAACTACTGAA 987 Query 7784 AATTTGATTGGATTATTTCAAAATTCTAGAACAAT 7818 | || ||||||||| ||||||||| ||||| Sbjct 988 TCGATTATAGGATTATTTGAAAATTCTAAGACAAT 1022 >seq18 Length=5623067 Score = 105 bits (116), Expect = 5e-19 Identities = 231/345 (67%), Gaps = 1/345 (0%) Strand=Plus/Minus Query 6323 TTCTTTTCTCTAATGTCATGGATGTTGCGAGAATATTTTGTGATAACAGAATATTTAATC 6382 ||||| ||||| ||| |||| | | |||| |||||||||||||| ||||| | || Sbjct 2777388 TTCTTCTCTCTCATGAGCTGGAGGCTAAGAGAGTATTTTGTGATAACCGAATACCTGATA 2777329 Query 6383 AAGGAGAATTACGTTCCTCTGTTTAGTGGATTGACAATGGCTGATGATTTGACAACTGTC 6442 || | | | || || | || | ||| | || ||||| ||||| || || || || Sbjct 2777328 AAATTGCACTTTGTGCCATTATTCAAGGGAATCACCATGGCAGATGACTTAACTACACTC 2777269 Query 6443 ATATCAAAATTGTTAGATAGGAGTCAGGGACAAGGTGGTAAAGATTACACTAAT-ATTTG 6501 ||| || | ||||||| |||||||| | | ||||| | | |||| Sbjct 2777268 ATAAAGAAGCTTTTAGATACATCCTCGGGACAAGCTTTGACGGATTATCGGAGTTATTTC 2777209 Query 6502 TATCGCAAATCATATTGACTATGAGAAATGGAACAACCATCAAAGAAAAGCTGCAACTGA 6561 ||| || |||||||| || ||||| |||||||| || ||| || | | | | ||| Sbjct 2777208 TATAGCTAATCATATAGATTATGAAAAATGGAATGCTCACCAACGAGGAACAGGGAATGA 2777149 Query 6562 TCCAGTTTTCAAGGTCATGGGAGAGTTCTTAGGATATCCCAACTTATTCACAAGAACTCA 6621 |||| ||||||||||||||| | || ||||| ||||||| | | |||||| | Sbjct 2777148 TCCATGTTTCAAGGTCATGGGTCAATTTTTAGGTCTGCCCAACTCAATACTCAGAACTAA 2777089 Query 6622 CGAATTCTTTCAAGAAAGTCTAATTTACTACAATGGACGACCAGA 6666 ||||| ||| ||| | |||| || ||| ||||||||| Sbjct 2777088 TGAATTTTTTAGTAAAATTACTTTTTATTATAATCAACGACCAGA 2777044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35413421101716