Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_031302.1 Length=11370 Score E Sequences producing significant alignments: (Bits) Value seq40 140 2e-29 seq18 113 3e-21 >seq40 Length=949583 Score = 140 bits (154), Expect = 2e-29 Identities = 242/348 (70%), Gaps = 3/348 (1%) Strand=Plus/Plus Query 6463 GAGGCAGATTCTTTGCCTTGATGTCCTGGGAAATAAGGGATTATTTTGTAATGACTGAGT 6522 |||| ||||||||| | | ||| ||| | |||| || ||||||||||| || |||| Sbjct 1657 GAGGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGT 1716 Query 6523 ACTTGATTAAAACACACTTTGTTCCTCTATTTGATGGACTCACAATGGCAGATGACTTAA 6582 | || |||||| ||| | |||||| || || | || | |||||||||||||| |||| Sbjct 1717 ATTTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAA 1776 Query 6583 CAACGGTAATCGGGAAAATTCTTCGAAACA-CGGAAGGACAAGGAGATACATCCTATGAA 6641 |||| | | |||| | || || || | ||| ||||| | ||| | Sbjct 1777 CAACTTTGACAAAGAAATTGCTG-GATACTTCATCAGGTCAAGGTCTGGCTGACTACGGG 1835 Query 6642 AATGTGACTTTTGCTGATCATATTGATTATGAAAAATGGAATAATCACCAAAGAGCAGAG 6701 | | || | ||| || |||| |||||||||||||||||| || ||||||| |||| Sbjct 1836 ATCATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAGAG 1895 Query 6702 GGAAACAACCCTACCTTCAGGGTTATGGGTCAATTTTTAGGGTACCCAAATTTGATTGAA 6761 || ||| | ||| || | || ||||| |||||||||| | ||||| || || | | Sbjct 1896 GG-AACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTA 1954 Query 6762 AGAACACATGAAATCTTTGAAAAATCTTGGATATACTATAATCGAAGA 6809 ||||| |||||| ||||| | ||| | | || ||||||| |||| Sbjct 1955 AGAACGCATGAATTCTTTAATAAAATTATATTCTATTATAATCAAAGA 2002 >seq18 Length=5623067 Score = 113 bits (124), Expect = 3e-21 Identities = 179/250 (72%), Gaps = 5/250 (2%) Strand=Plus/Minus Query 6496 TAAGGGATTATTTTGTAATGACTGAGTACTTGATTAAAACACACTTTGTTCCTCTATTTG 6555 |||| || |||||||| || || || ||| |||| ||| |||||||| || |||| Sbjct 2777363 TAAGAGAGTATTTTGTGATAACCGAATACCTGATAAAATTGCACTTTGTGCCATTATTCA 2777304 Query 6556 ATGGACTCACAATGGCAGATGACTTAACAACGGTAATCGGGAAAATTCTTCGAAACA-CG 6614 | ||| |||| ||||||||||||||||| || | || ||| || || || ||| | Sbjct 2777303 AGGGAATCACCATGGCAGATGACTTAACTACACTCATAAAGAAGCTT-TTAGATACATCC 2777245 Query 6615 GAAGGACAAGGAGATACATCCTAT-GAAAATGTGACTTTTGCTGATCATATTGATTATGA 6673 ||||||| || ||| | | | | || | ||| ||||||| |||||||| Sbjct 2777244 TCGGGACAAGCTTTGACGGATTATCGGAGTTATTTCTATAGCTAATCATATAGATTATGA 2777185 Query 6674 AAAATGGAATAATCACCAAAGAGCAG-AGGGAAACAACCCTACCTTCAGGGTTATGGGTC 6732 |||||||||| ||||||| ||| | |||||| | || | |||| ||| ||||||| Sbjct 2777184 AAAATGGAATGCTCACCAACGAGGAACAGGGAATGATCCATGT-TTCAAGGTCATGGGTC 2777126 Query 6733 AATTTTTAGG 6742 |||||||||| Sbjct 2777125 AATTTTTAGG 2777116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36267797485032