Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_031690.1 Length=11308 Score E Sequences producing significant alignments: (Bits) Value seq40 150 1e-32 seq18 116 3e-22 >seq40 Length=949583 Score = 150 bits (166), Expect = 1e-32 Identities = 228/323 (71%), Gaps = 1/323 (0%) Strand=Plus/Minus Query 4507 TTTTTCAAAGAATTCATGAGTTCGAGATATTAGTTTTGGATACCCAAGAAACTTTCCCAT 4566 ||| | |||||||||||| |||| |||| ||||| | || | ||| || ||||| Sbjct 1978 TTTATTAAAGAATTCATGCGTTCTTACGATTAAGTTTGGCAATCCTAAAAATTTGCCCAT 1919 Query 4567 CACATCAAATACAGGATTATTGGCTTTGGCTCGTTGATGGTTATTCCATTTGCTATAATC 4626 ||| | ||| | ||||| || || | ||| ||||||| ||||||||| |||||| Sbjct 1918 CACTTTAAAAAAAGGATCGTTCCCTCTC-CTCTTTGATGGGCATTCCATTTTTCATAATC 1860 Query 4627 AAAGTGATTGGCGATACAGATGTTCTCGTACCCTTCACTTCCTTGACCTGAAGTTGTATC 4686 | | ||| || ||| ||||| || |||| | | ||||||||||| | ||||| Sbjct 1859 TATATCATTAGCTATAGAGATGATCCCGTAGTCAGCCAGACCTTGACCTGATGAAGTATC 1800 Query 4687 CATCATTTTCTTTATGACGGTAGTCATATCATCTGCCATAGTTAGTCCTTTAAACAATGG 4746 || || ||||||| | | || || | |||||||||||| || | ||||| || | || Sbjct 1799 CAGCAATTTCTTTGTCAAAGTTGTTAAATCATCTGCCATTGTAATCCCTTTGAAAAGGGG 1740 Query 4747 AACAAAGTGAGTCTTGATTAGGTGTTCTGTTATTACAAAATACTCTCGTAAAGCCCAGGT 4806 |||| | || || |||| | || || |||||||||||||||| || ||| | Sbjct 1739 AACATAATGTTATTTAATTAAATACTCCGTAATTACAAAATACTCTCTTAGTCGCCAACT 1680 Query 4807 CAATAGAGCATAAAATCTTCCTC 4829 || ||||| | | |||||||||| Sbjct 1679 CATTAGAGAAAAGAATCTTCCTC 1657 >seq18 Length=5623067 Score = 116 bits (128), Expect = 3e-22 Identities = 224/319 (70%), Gaps = 10/319 (3%) Strand=Plus/Plus Query 4502 AGTGATTTTTC-AAAGAATTCATGAGTTC-GAGATATT-AGTTTTGGATACCCAAGAAAC 4558 ||| ||||| | ||| ||||||| ||||| ||| |||| |||| | | ||| || ||| Sbjct 2777067 AGTAATTTTACTAAAAAATTCATTAGTTCTGAG-TATTGAGTTGGGCAGACCTAA-AAAT 2777124 Query 4559 TTTCCCATCACATCAAATACA-GGATTATTGGCTTTGGCTCGTTGATGGTTATTCCATTT 4617 | ||||| || | || ||| |||| ||| || | ||||||| || ||||||||| Sbjct 2777125 TGACCCATGACCTTGAA-ACATGGATCATTCCCTGTTCCTCGTTGGTGAGCATTCCATTT 2777183 Query 4618 GCTATAATCAAAGTGATTGGCGATACAGATGTTCTCGT--ACCCTTCACTTCCTTGACCT 4675 |||||| | ||||| || ||| | || || | || ||| | ||| || Sbjct 2777184 TTCATAATCTATATGATTAGCTATAGAAATAACTCCGATAATCCGTCAAAGC-TTGTCCC 2777242 Query 4676 GAAGTTGTATCCATCATTTTCTTTATGACGGTAGTCATATCATCTGCCATAGTTAGTCCT 4735 || | |||||| | | |||||||||| ||||| | ||||||||||| || | ||| Sbjct 2777243 GAGGATGTATCTAAAAGCTTCTTTATGAGTGTAGTTAAGTCATCTGCCATGGTGATTCCC 2777302 Query 4736 TTAAACAATGGAACAAAGTGAGTCTTGATTAGGTGTTCTGTTATTACAAAATACTCTCGT 4795 || || ||||| |||||||| || || |||| ||| ||||| ||||||||||||| | Sbjct 2777303 TTGAATAATGGCACAAAGTGCAATTTTATCAGGTATTCGGTTATCACAAAATACTCTCTT 2777362 Query 4796 AAAGCCCAGGTCAATAGAG 4814 | |||| ||| |||| Sbjct 2777363 AGCCTCCAGCTCATGAGAG 2777381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36069402969056