Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_031691.1 Length=11238 Score E Sequences producing significant alignments: (Bits) Value seq40 136 3e-28 seq18 114 9e-22 >seq40 Length=949583 Score = 136 bits (150), Expect = 3e-28 Identities = 245/354 (69%), Gaps = 7/354 (2%) Strand=Plus/Minus Query 4442 TCTGGTCTTTGATTGTAATAAATCAGACTCTGTTCAAAGAATTCATGGGTTCTAGATATT 4501 || ||||||||||| ||||| | | | | | | |||||||||||| ||||| ||| Sbjct 2007 TCAGGTCTTTGATTATAATAGAATATAATTTTATTAAAGAATTCATGCGTTCTTACGATT 1948 Query 4502 AAGTTGGGGTATCCCAAAAATTGTCCCATTACCTTGAATGTGGGATTATTGGCTGCTCCC 4561 ||||| || |||| ||||||| ||||| || || || |||| || || |||| Sbjct 1947 AAGTTTGGCAATCCTAAAAATTTGCCCATCACTTTAAAAAAAGGATCGTTCCCT-CTCCT 1889 Query 4562 CTCTGATGATTGTTCCATTTTTCATAATCTACATGGTTGGC-AAAGCTTACATGAT--CA 4618 || ||||| ||||||||||||||||||| || || || | || | ||||| | Sbjct 1888 CTTTGATGGGCATTCCATTTTTCATAATCTATATCATTAGCTATAG---AGATGATCCCG 1832 Query 4619 TAATTATCCGTACCTTGACCATATGTGTTGTCCATTAATTTTTTAGTCAAAACGGTGGAG 4678 || | | || ||||||||| ||| | |||| ||||| || |||||| || | Sbjct 1831 TAGTCAGCCAGACCTTGACCTGATGAAGTATCCAGCAATTTCTTTGTCAAAGTTGTTAAA 1772 Query 4679 TTATCTGCCATGGTTAGACCTTTAAATAATGGGACAAAATGCTTCTTGATCAGATATTCT 4738 | ||||||||| || | ||||| || | || ||| |||| | || || | ||| || Sbjct 1771 TCATCTGCCATTGTAATCCCTTTGAAAAGGGGAACATAATGTTATTTAATTAAATACTCC 1712 Query 4739 GTTATTACGAAGTATTCTCTCAACTCCCAGGACATGAGCGCAAAAAATCTTCCT 4792 || ||||| || || ||||| | ||| ||| || | ||| ||||||||| Sbjct 1711 GTAATTACAAAATACTCTCTTAGTCGCCAACTCATTAGAGAAAAGAATCTTCCT 1658 Score = 80.6 bits (88), Expect = 2e-11 Identities = 76/97 (78%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 3290 ATTGTTTTTGAATTTTCAAATAACCCTATAAGAGACTCTGTAATGCCTAAGTACGTTGCA 3349 ||||| || |||||||||||||| ||||||| || || ||| | || | || |||||| Sbjct 1022 ATTGTCTTAGAATTTTCAAATAATCCTATAATCGATTCAGTAGTTCCAATATAAGTTGCA 963 Query 3350 GATTTGTATTCACTCAGAAATCTAGGGAATAATGGCT 3386 ||| ||||||||| ||| ||||| ||||| |||| Sbjct 962 TTTTTAAATTCACTCAAAAACCTAGGAAATAAAGGCT 926 >seq18 Length=5623067 Score = 114 bits (126), Expect = 9e-22 Identities = 234/345 (68%), Gaps = 7/345 (2%) Strand=Plus/Plus Query 4436 ATCAGATCTGGTCTTTGATTGTAATAAATCAGACTCTGTTCAAAGAATTCATGGGTTCTA 4495 ||| | ||||||| |||||| ||||||| | | | ||| ||||||| ||||| Sbjct 2777038 ATCGGGTCTGGTCGTTGATTATAATAAAAAGTAATTTTACTAAAAAATTCATTAGTTCTG 2777097 Query 4496 GATATTAAGTTGGGGTATCCCAAAAATTGTCCCATTACCTTGAATGTGGGATTATTGGCT 4555 |||| ||||||| || |||||||| ||||| |||||||| |||| ||| || Sbjct 2777098 AGTATTGAGTTGGGCAGACCTAAAAATTGACCCATGACCTTGAAACATGGATCATTCCCT 2777157 Query 4556 GCTCCCCTCTGATGATTGTTCCATTTTTCATAATCTACATGGTTGGC-AAAGCTTACATG 4614 | ||| | || ||| ||||||||||||||||||| ||| || || | || | || Sbjct 2777158 GTTCCTCGTTGGTGAGCATTCCATTTTTCATAATCTATATGATTAGCTATAG---AAATA 2777214 Query 4615 ATCATAATTATCCGT---ACCTTGACCATATGTGTTGTCCATTAATTTTTTAGTCAAAAC 4671 | || |||||| | |||| || | | | || | | || || | | Sbjct 2777215 ACTCCGATAATCCGTCAAAGCTTGTCCCGAGGATGTATCTAAAAGCTTCTTTATGAGTGT 2777274 Query 4672 GGTGGAGTTATCTGCCATGGTTAGACCTTTAAATAATGGGACAAAATGCTTCTTGATCAG 4731 || ||| |||||||||||| | || || |||||||| ||||| ||| || ||||| Sbjct 2777275 AGTTAAGTCATCTGCCATGGTGATTCCCTTGAATAATGGCACAAAGTGCAATTTTATCAG 2777334 Query 4732 ATATTCTGTTATTACGAAGTATTCTCTCAACTCCCAGGACATGAG 4776 ||||| ||||| || || || ||||| | | |||| |||||| Sbjct 2777335 GTATTCGGTTATCACAAAATACTCTCTTAGCCTCCAGCTCATGAG 2777379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35845409160696