Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_031240.1 Length=11541 Score E Sequences producing significant alignments: (Bits) Value seq161124 87.8 1e-13 >seq161124 Length=1101 Score = 87.8 bits (96), Expect = 1e-13 Identities = 204/300 (68%), Gaps = 11/300 (4%) Strand=Plus/Minus Query 6203 TGGCATGAGTTGCCTTTAATTAAATGTTTTGATATACCTGATGTTGTGGACCCATCTATT 6262 |||||| | |||||||| | || || ||||| ||||| || ||||| || || ||||| Sbjct 296 TGGCATAAATTGCCTTTGAAGAAGTGCTTTGAAATACCCGAAGTTGTAGATCCGTCTATC 237 Query 6263 ATTTATTCAGATAAAAGTCATTCCCTCACCAGATCAGAAATAAAAAATTATTTAAC---- 6318 || |||||||||||||||||| | | | |||||| || | || || | | Sbjct 236 ATCTATTCAGATAAAAGTCATGCAATGGATAAATCAGATATTATCAAACATCTGGCAGGT 177 Query 6319 CCTTCATCCAAATTCA-TCGATACCCTCTAAAAAAGTTCTCTCCACACTTTTAGAAAGCC 6377 || | ||||| || ||||||| || ||||||| ||||| || || || | | Sbjct 176 CCGAGAGCCAAA--CAGCCGATACCGACTCAAAAAGTACTCTCAACTCTGTTGGGTCG-A 120 Query 6378 CAAGC-ACAAATTGGCCGGAGTTTCTACAACGAATAAATGATTTTGGGATCTCAATTGAA 6436 |||| || ||||||||||| || || || || |||| | ||| | | | | | Sbjct 119 GAAGCAACGAATTGGCCGGAATTCCTCAAAACCATCGATGAGGTCGGGCT-TGATCAGGA 61 Query 6437 C-ATTTAGTGATTGGTTTAAAAGAGAAAGAAAGAGAGTTGAAGATAGGAGGAAGATTTTT 6495 | | | |||||||| || |||| ||||| || ||| || || |||||||||||| Sbjct 60 CAAACTGGTGATTGGATTGAAAGCCAAAGAGAGGGAGCAAAAAGAAGAAGGAAGATTTTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36744594953820