Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_002526.1 Length=14900 Score E Sequences producing significant alignments: (Bits) Value seq121975 150 2e-32 seq34844 91.5 1e-14 >seq121975 Length=4353 Score = 150 bits (166), Expect = 2e-32 Identities = 329/488 (67%), Gaps = 6/488 (1%) Strand=Plus/Plus Query 9920 AGAATACCTACTAAGAGAGTATTGCAAACTTTGCTTGAAAAACCAGCAACAAATTGGCCA 9979 |||| ||| || || | ||||| ||| || || | || || | | || |||||| Sbjct 190 AGAACACCAACAAAAAAGGTATTAACAACATTACTAGGAACCCCTGATATAATATGGCCA 249 Query 9980 GAATTTCTCAAGGCGGTGAATGATTATGGTTTAGATTGGGAAAAATTGGTAATTGGACTA 10039 || ||| | ||| | |||||| ||| ||||| | | | | || |||| ||| || Sbjct 250 GACTTTGTGAAGAAAATTAATGATGTTGGATTAGACTTGAATTCACTGATAATAGGATTA 309 Query 10040 AAGGCTAAGGAAAGAGAGCTTAAAGAAGAAGGGAGGtttttttCATTAATGTCTTATGAA 10099 | || || ||| |||| | ||| | || || | ||| | |||||||| | || Sbjct 310 AGAGCAAAAGAACGAGAAATGAAAATTGCTGGTAGATATTTCGCTTTAATGTCCTGGGAG 369 Query 10100 TTAAGGGATTATTTTGTCTCAACGGAGTACTTAATaaaaaaaTACTTTGTGCCATTATTT 10159 || ||| ||||||| || |||||||| || ||| || | | ||| ||| ||||| Sbjct 370 ACTAGATGTTACTTTGTCTTAATCGAGTACTTGATCAAACAACATTATGTACCACTATTT 429 Query 10160 GAAGGATTGACAATGGCTGATGACCTAAATACTGTTATCaaaaaa-aTGTTAGATGTCTC 10218 | ||||| || ||||| || || ||||||| ||| |||| || ||| | || || Sbjct 430 AAGGGATTAACCATGGCAGACGATTTAAATACA-TTAACAAAGAAGATGATGGAAACTTC 488 Query 10219 TAGTGGTCAGGGAACAAGGGAATATGAATACATCACAATTGCCAATAATATTGATTATGA 10278 || ||||| || | | | || || ||||| || || ||| || | ||||| Sbjct 489 TATGGGTCAAGGTATAGACAATTACGACTACATTTGTATAGCAAATCATTTAGATTACTC 548 Query 10279 AAAATGGAATAACTATCAAAGAATTGAATCCAATGGGCCGGTGTTCACTGTGATGGGACG 10338 |||||||||||| |||| |||| ||| ||||| || || |||| |||||||||| Sbjct 549 GAAATGGAATAACAATCAGAGAAAAGAAGCCAATAATCCTGTATTCAAAGTGATGGGACA 608 Query 10339 ATTTTTAGGCTTGCC--TAATTTGTTTACTAGAACTCATGAGTTTTTCCAAAAGAGTTTG 10396 |||| | || |||| ||||| ||||| ||||| ||||| | || | | |||||| Sbjct 609 ATTTCTTGG--TGCCGAGAATTTATTTACAAGAACGCATGAAATCTTTGAGAGGAGTTTA 666 Query 10397 ATCTATTA 10404 ||||| || Sbjct 667 ATCTACTA 674 >seq34844 Length=5462 Score = 91.5 bits (100), Expect = 1e-14 Identities = 380/587 (65%), Gaps = 22/587 (4%) Strand=Plus/Minus Query 10271 GATTATGAAAAATGGAATAACTATCAAAGAATTGAATCCAATGGGCCGGTGTTCACTGTG 10330 |||||| || |||||||| |||| || | ||| | || || || |||| || Sbjct 4556 GATTATTCTAAGTGGAATAATAATCAGAGGAAAGAAGCAAACAACCCAGTTTTCAAAGTC 4497 Query 10331 ATGGGACGATTTTTAGGCTTGCCTAATTTGTTTACTAGAACTCATGAGTTTTTCCAAAAG 10390 ||||||| |||| | || || ||||||||||| |||||||||||| ||||| |||| Sbjct 4496 ATGGGACAATTTATGGGAGCACCCAATTTGTTTACGAGAACTCATGAGATTTTCGAAAAT 4437 Query 10391 AGTTTGATCTATTACAACCAAAGACCAGACCTCATGATGGTGAGAGGACGGGAATGTCTG 10450 ||||| || ||||| || || | |||| || | || | | Sbjct 4436 AGTTTAATTTATTATCCTGCTAGGGGTGATTTAATGACAGTACGTAACAATCAAGTTGTC 4377 Query 10451 AACAGATTGGGA-GTGAAAGTGTGTTGGGAAGGACAAAAGGGAGGATTAGAAGGTTTGAG 10509 || | ||| || || ||| || ||| | || || | |||||| | ||||| | || Sbjct 4376 AATA-ATTCAGACCTGCGAGTTTGCTGGCAGGGTCAGAGTGGAGGAATGGAAGGACTAAG 4318 Query 10510 ACAAAAGGGATGGAGCATATTA-AATTA--TTTGATGATAGAGAGAGAAAGTAGAGTAAG 10566 ||||||||| ||| || || ||| || || | | ||||| | | || | | | Sbjct 4317 ACAAAAGGGTTGGTCAATCGTAGGGTTACTTTCCATCA-ACAGAGAAATATTACA--ACG 4261 Query 10567 AAACACAAGAGTTAAAATTCTTGCTCAAGGAGACAATCAGACAAT---CAGCATGTGTTA 10623 ||||||| ||| ||| | | ||||| |||||||| || ||| || |||| || Sbjct 4260 AAACACATTAGTAAAAGTATTAGCTCAGGGAGACAACCAAGTAATATGCACCATG---TA 4204 Query 10624 TAAAACAGAGAGCTGGCAAAATGAGGAAGAGTTAGATAACCATATCAAAAATATGGTCTC 10683 ||| | | | || |||| |||||| || | ||| ||||||| | Sbjct 4203 TAAGATACAATCCTATTCTGATGATAGCGAGTTAATGAAAAACATCGAAAATATAAT--- 4147 Query 10684 CAATAACAATCAA---ATAATGCAAGCAATCATAAACGGGACTGAAAAGCTCGGATTGAG 10740 || || ||| || || ||| |||| || || || | ||||| || || ||| Sbjct 4146 AAAAAATAATGAAGCTATCATGAAAGCTATTGAAAGAGGAGCAGAAAAACTTGGGTTGGA 4087 Query 10741 AATCAATTTGGATGAGACCATGACAAGTGCTGATTATATAAATTATGGGAAAGTTCCTAT 10800 ||| ||| ||||| || || |||||| |||||| | ||||| || |||||||| || Sbjct 4086 AATAAATGAAGATGAAACAATTCAAAGTGCCGATTATCTTAATTACGGTAAAGTTCCCAT 4027 Query 10801 AATT-GAGGGAACAATAAAGGGACTGCCAACAAAAAGATGGTCTCGA 10846 |||| | || |||| | | | ||| | |||| |||||||||||| Sbjct 4026 AATTAGGGGAAACATTCATGTATCTG-AATCAAAGAGATGGTCTCGA 3981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 47445390230873