Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_011639.1 Length=13196 Score E Sequences producing significant alignments: (Bits) Value seq121975 233 2e-57 seq34844 145 6e-31 >seq121975 Length=4353 Score = 233 bits (258), Expect = 2e-57 Identities = 317/437 (73%), Gaps = 4/437 (1%) Strand=Plus/Plus Query 8362 AAGATAAATGACTTTGGATTAGATTTGAAGTCTCTCATCATTGGACTAAAAGCTAAAGAA 8421 || || ||||| |||||||||| ||||| || || || || ||| ||| ||| |||||| Sbjct 262 AAAATTAATGATGTTGGATTAGACTTGAATTCACTGATAATAGGATTAAGAGCAAAAGAA 321 Query 8422 AGAGAAATGAAACGGATTGGAAGATTCTTCTCTTTAATGTCATGGGA-ACTCAGAGAGTA 8480 ||||||||||| ||| |||| ||| |||||||||| ||||| ||| ||| || Sbjct 322 CGAGAAATGAAAATTGCTGGTAGATATTTCGCTTTAATGTCCTGGGAGACT-AGATGTTA 380 Query 8481 TTTTGTTTTTACTGAGTACCTTATTAAGGAATATTTTGTTCCTCTATTCCATGGATTAAC 8540 ||||| || | |||||| | || || || ||| ||| || ||||| | |||||||| Sbjct 381 CTTTGTCTTAATCGAGTACTTGATCAAACAACATTATGTACCACTATTTAAGGGATTAAC 440 Query 8541 TATGGCTGATGATCTACAATCTGTTATAAAGAAGATGTTAGAAAATTCTCAAGGCCAAGG 8600 ||||| || ||| || | | | | |||||||||| | |||| |||| || ||||| Sbjct 441 CATGGCAGACGATTTAAATACATTAACAAAGAAGATGATGGAAACTTCTATGGGTCAAGG 500 Query 8601 ATCTA-ATGATTATGAGTATGTTTCAATAGCAAATCATATTGATTATGAAAAATGGAATA 8659 | || | |||| || || ||| |||||||||||| | ||||| |||||||||| Sbjct 501 -TATAGACAATTACGACTACATTTGTATAGCAAATCATTTAGATTACTCGAAATGGAATA 559 Query 8660 ATCACCAAAGGAAAGAATCAAATTATTATGTTTTCAAAGTAATGGGCCAGTGTTTCGGTC 8719 | | || || |||||| | ||| || ||| |||||||| ||||| || | | | ||| Sbjct 560 ACAATCAGAGAAAAGAAGCCAATAATCCTGTATTCAAAGTGATGGGACAATTTCTTGGTG 619 Query 8720 TTCCAAACTTATTTACACGAACACATGAATTCTTTGAACAAAGTTTGATTTATTATCCTC 8779 || ||||||||| |||| |||||| ||||||| ||||| || || ||||| Sbjct 620 CCGAGAATTTATTTACAAGAACGCATGAAATCTTTGAGAGGAGTTTAATCTACTATCCAG 679 Query 8780 AAAGAGCTGATTTGATG 8796 ||||| |||||| ||| Sbjct 680 CAAGAGGTGATTTAATG 696 Score = 80.6 bits (88), Expect = 2e-11 Identities = 220/325 (68%), Gaps = 19/325 (6%) Strand=Plus/Plus Query 8934 AAGAAACACAAAGGTTAAAGTATTAGCACAAGGGGATAATCAAACAATCAGTACTTTTTA 8993 ||||||||| ||| ||||| | ||||||| ||||||||| || |||| | || Sbjct 893 AAGAAACACTTTGGTAAAAGTTCTGGCACAAGAAGATAATCAAGTTATATGTACAATGTA 952 Query 8994 TCATCTTCAGTCTCATTTTGACGAAAATGAATTA-ATCGATCAAT-TGGCCAATATTTGT 9051 | | | ||| || || |||| ||| || ||| | ||| | | |||||| | Sbjct 953 TAAAATGCAGCCTTATACGTGTGAAACGGAACTAGATCAA--AATATAGAGAATATTA-T 1009 Query 9052 AAGAATAATAAAGCTATTATGAATGCGATTGAAGCAGGGACAACTAAATTGGGGTTGATA 9111 ||| || || || |||||||| || |||||| ||| ||| || |||| || || | Sbjct 1010 AAGGATGAT---GCAATTATGAAAGCTATTGAAAGAGGTACAGCTTAATTAGGATTAGAA 1066 Query 9112 ATAAATCGTGATGAGACTATGATAAGTGCCGATTATTTAAATTATGGGAAAGTCCCAATT 9171 ||||| ||||| || || || |||||||||||||||| ||||| ||||| || Sbjct 1067 ATAAACGAAGATGA-ACGATACAGAGCTCCGATTATTTAAATTACGGGAAGGTCCCGATA 1125 Query 9172 TTTAGAGGGGTTATTAGAGGCTT--GCATCTCAAAAGATGGTCAAG---AGTCAATTGTG 9226 | ||||| ||| | | || | |||| ||||| |||||||| || || || Sbjct 1126 ATCAGAGGAAACATT-CATGTTTCAGAATCTAAAAAG-TGGTCAAGACTAGCCACTT--- 1180 Query 9227 TAACAAACGATCAAGTCCCATCTTT 9251 || |||| ||||| | ||| |||| Sbjct 1181 TATCAAATGATCAGTTACCAACTTT 1205 >seq34844 Length=5462 Score = 145 bits (160), Expect = 6e-31 Identities = 378/567 (67%), Gaps = 26/567 (5%) Strand=Plus/Minus Query 8626 ATAGCAAATCATATTGATTATGAAAAATGGAATAATCACCAAAGGAAAGAATCAAATTAT 8685 ||||| || || | |||||| || ||||||||| | || ||||||||| |||| | Sbjct 4571 ATAGCTAACCACTTGGATTATTCTAAGTGGAATAATAATCAGAGGAAAGAAGCAAACAAC 4512 Query 8686 TATGTTTTCAAAGTAATGGGCCAGTGTTTCGGTCTTCCAAACTTATTTACACGAACACAT 8745 ||||||||||| ||||| || | | | || || || || ||||| |||| ||| Sbjct 4511 CCAGTTTTCAAAGTCATGGGACAATTTATGGGAGCACCCAATTTGTTTACGAGAACTCAT 4452 Query 8746 GAATTCTTTGAACAAAGTTTGATTTATTATCCTCAAAGAGCTGATTTGATGCACGTTGAA 8805 || | || ||| | ||||| |||||||||||| || | |||||| ||| || | Sbjct 4451 GAGATTTTCGAAAATAGTTTAATTTATTATCCTGCTAGGGGTGATTTAATG-AC-----A 4398 Query 8806 GGCGATACACTAACAAACTCGTCCGCA-----TCA---CTG---GTGTGTTGGAATGGAC 8854 | ||| |||||| | || || ||| ||| || || ||| | || | Sbjct 4397 G----TACG-TAACAATCAAGTTGTCAATAATTCAGACCTGCGAGTTTGCTGGCAGGGTC 4343 Query 8855 AAAAAGGGGGTTTAGAAGGATTAAGACAAAAAGGATGGTCAGTATTAAA-TTATTTAGTT 8913 | | || || | |||||| |||||||||| || |||||| | || ||| || Sbjct 4342 AGAGTGGAGGAATGGAAGGACTAAGACAAAAGGGTTGGTCAATCGTAGGGTTACTTTCC- 4284 Query 8914 ATAGAAAGGGAATCTAGGATAA-GAAACACAAAGGTTAAAGTATTAGCACAAGGGGATAA 8972 || | || ||| || | || |||||||| || ||||||||||| || || || || Sbjct 4283 ATCAACAGAGAAA-TATTACAACGAAACACATTAGTAAAAGTATTAGCTCAGGGAGACAA 4225 Query 8973 TCAAACAATCAGTACTTTTTATCATCTTCAGTCTCATTTTGACGAAAATGAATTAATCGA 9032 ||| ||| | || | ||| | | || || ||| ||| || | || ||||| | Sbjct 4224 CCAAGTAATATGCACCATGTATAAGATACAATCCTATTCTGATGATAGCGAGTTAATGAA 4165 Query 9033 TCAATTGGCCAATATTTGTAAGAATAATAAAGCTATTATGAATGCGATTGAAGCAGGGAC 9092 | | | ||||| || |||||| ||||||| ||||| || |||||| ||| | Sbjct 4164 AAACATCGAAAATATAATAAAAAATAATGAAGCTATCATGAAAGCTATTGAAAGAGGAGC 4105 Query 9093 AACTAAATTGGGGTTGATAATAAATCGTGATGAGACTATGATAAGTGCCGATTATTTAAA 9152 | ||| | |||||| ||||||| ||||| || || ||||||||||||| | || Sbjct 4104 AGAAAAACTTGGGTTGGAAATAAATGAAGATGAAACAATTCAAAGTGCCGATTATCTTAA 4045 Query 9153 TTATGGGAAAGTCCCAATTTTTAGAGG 9179 ||| || ||||| || || |||| || Sbjct 4044 TTACGGTAAAGTTCCCATAATTAGGGG 4018 Score = 102 bits (112), Expect = 7e-18 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 10294 TATCTCGGATCTAAAACATCTGAATCAACTTCTATAATCCAACCCTGGGAGAAAGAGACA 10353 || |||||||||||||| ||||||| ||| |||| | || ||||| |||||||| Sbjct 2903 TACCTCGGATCTAAAACCTCTGAATTTACTAGTATATACAGGCCATGGGAAAAAGAGACT 2844 Query 10354 AATATCCCTCTTATTAGAAGGGCATCAAAATTAAGGAATGCAATATCATGGTTCATTAAT 10413 || ||||| || | | ||||| | | ||||| ||||||||| ||||||||| ||| Sbjct 2843 TCAATTCCTCTAATCAAACGGGCAGCTAGTTTAAGAAATGCAATAGGATGGTTCATCAAT 2784 Query 10414 CCTGATTCTAATTTAGCCAAATCAATCATGGAGAATATGAGATCCTTAACAGGGGAAGA 10472 || || ||||||| || |||||| | ||| | ||| |||||||| ||||| Sbjct 2783 AAAGAGTCAAATTTAGGAAATTCAATCTGCCAAAATCTAGAATCATTAACAGGAGAAGA 2725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 42005913345089