Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_020803.1 Length=11487 Score E Sequences producing significant alignments: (Bits) Value seq121975 125 5e-25 seq34844 123 2e-24 >seq121975 Length=4353 Score = 125 bits (138), Expect = 5e-25 Identities = 252/374 (67%), Gaps = 0/374 (0%) Strand=Plus/Plus Query 6586 TGGCCAGAATTTTTGTCAAGGATTGAGGAAGATGGACTACCCAAAGAGTCTCTGATCATA 6645 |||||||| ||| || | ||| | || | |||| || | | || ||||| ||| Sbjct 244 TGGCCAGACTTTGTGAAGAAAATTAATGATGTTGGATTAGACTTGAATTCACTGATAATA 303 Query 6646 GGCTTAAAAGGGAAAGAACGTGAATTAAAAAAGGCAGGACGGTTCTTCTCTCTGATGTCA 6705 || |||| || |||||||| ||| | |||| || || | | ||| || | ||||| Sbjct 304 GGATTAAGAGCAAAAGAACGAGAAATGAAAATTGCTGGTAGATATTTCGCTTTAATGTCC 363 Query 6706 TGGGAATTGAGAGAATATTTTGTAATAACAGAATACTTAATCAAGACACACTATGTGCCC 6765 ||||| ||| || ||||| ||| || ||||| ||||| ||| ||||| || Sbjct 364 TGGGAGACTAGATGTTACTTTGTCTTAATCGAGTACTTGATCAAACAACATTATGTACCA 423 Query 6766 TTATTCAAAGGGTTAACCATGGCAGATGATATGACGGAAGTTGTAAAGAAAATGCTAGAA 6825 |||| || || |||||||||||||| ||| | | | | |||||| ||| | ||| Sbjct 424 CTATTTAAGGGATTAACCATGGCAGACGATTTAAATACATTAACAAAGAAGATGATGGAA 483 Query 6826 AGGAGTCAAGGGCAGGGAGAAGATGACTACGAGCACATCAGCATTGCCAACCACATTGAC 6885 | | || || || ||| | ||||| |||| | || || || || | || Sbjct 484 ACTTCTATGGGTCAAGGTATAGACAATTACGACTACATTTGTATAGCAAATCATTTAGAT 543 Query 6886 TATGAGAAGTGGAATAATCATCAGAGAAAGGAATCAAATGGGCCTGTGTTCAGAGTCATG 6945 || ||| |||||||| |||||||||| ||| | ||| ||||| |||| ||| ||| Sbjct 544 TACTCGAAATGGAATAACAATCAGAGAAAAGAAGCCAATAATCCTGTATTCAAAGTGATG 603 Query 6946 GGACAATTCCTAGG 6959 |||||||| || || Sbjct 604 GGACAATTTCTTGG 617 Score = 93.3 bits (102), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 8731 ACAGGAGAGGATTGGTCTGGATCTATACAAGGCTTTAAAAGAACAGGATCTGCACTCCAC 8790 |||||||| ||||| ||| || ||| | || |||||| || || || || || Sbjct 2416 ACAGGAGAAGATTGTTCTAAGTCCATATCCAGTTTCTCAAGAACTGGTTCAGCCCTACAT 2475 Query 8791 AGATTCACAAGTGCTCGTGTGAGTGCGGGAGGATTTGCTGCCCAAAGCCCAGCTAGGCTG 8850 |||||| || || |||| || || ||||||| ||| || ||||| || | | || Sbjct 2476 AGATTCTCATGTTCTCGACAAAGCGCAGGAGGATATGCAGCTCAAAGTCCTGTAAAACTA 2535 Query 8851 ACCAGAATGATGGCAACAACAGATACATTCAGAGAAATAGGGAGTGATAAC---TATGAC 8907 || |||||||| | || || ||||| || |||| | || |||||| |||||| Sbjct 2536 ACGAGAATGATTTCTACCACCGATACTTTAGAAGAATT---GAATGATAAAAATTATGAC 2592 Query 8908 TTCATGTTTCAGTCATTGCTGCTTTACTCTCAGATGACAGCAGGAGAA 8955 |||||||| ||| | ||||| | || ||||| || ||| | || ||| Sbjct 2593 TTCATGTTCCAGACTTTGCTAATCTAATCTCAAATTACAACTGGGGAA 2640 Score = 82.4 bits (90), Expect = 6e-12 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 7756 TATTTGGACCCATCTCTAGGAGGCATATCCGGCATGTCTCTCACCAGATTTTTGATGAGG 7815 ||||| |||||||| ||||| || ||||| |||| | | | |||||| | || || Sbjct 1420 TATTTTGACCCATCGCTAGGGGGATCTTCCGGGATGTGTATGAGCAGATTCCTAATTAGA 1479 Query 7816 ATGTTCCCAGACCCTGTAACGGAGGGACTATCTTTCTGGA 7855 |||||||||||||| || || |||||||| ||||| |||| Sbjct 1480 ATGTTCCCAGACCCCGTGACAGAGGGACTTTCTTTTTGGA 1519 >seq34844 Length=5462 Score = 123 bits (136), Expect = 2e-24 Identities = 248/367 (68%), Gaps = 8/367 (2%) Strand=Plus/Minus Query 6868 ATTGCCAACCACATTGACTATGAGAAGTGGAATAATCATCAGAGAAAGGAATCAAATGGG 6927 || || |||||| | || ||| |||||||||||| ||||||| || ||| |||| Sbjct 4571 ATAGCTAACCACTTGGATTATTCTAAGTGGAATAATAATCAGAGGAAAGAAGCAAACAAC 4512 Query 6928 CCTGTGTTCAGAGTCATGGGACAATTCCTAGGATATCCCAGTTTGATCGAAAAAACTCAT 6987 || || |||| ||||||||||||||| | ||| |||| |||| | | ||||||| Sbjct 4511 CCAGTTTTCAAAGTCATGGGACAATTTATGGGAGCACCCAATTTGTTTACGAGAACTCAT 4452 Query 6988 GACTTTTTTCAAGACAGCTTGATTTATTACAATGGGAGACCAGACCTGATGGAAGTGAGG 7047 || |||| || | || || |||||||| || || || | ||| ||| | Sbjct 4451 GAGATTTTCGAAAATAGTTTAATTTATTATCCTGCTAGGGGTGATTTAATGACAGTACGT 4392 Query 7048 GGGAATGAATTATTGAACAAAACAGACAAGCTTGTCTGTTGGGATGGTCAGGCTGGAGGA 7107 ||| || | | || || ||||| || || || ||| | |||||| ||||||| Sbjct 4391 AACAATCAAGTTGTCAATAATTCAGACCTGCGAGTTTGCTGGCAGGGTCAGAGTGGAGGA 4332 Query 7108 CTGGAAGGACTGAGACAAAAGGGATGGAGCATATTGAATCTACTTGTGATTCAGAGAGAG 7167 |||||||||| ||||||||||| ||| || | ||||| || | ||||| Sbjct 4331 ATGGAAGGACTAAGACAAAAGGGTTGGTCAATCGTAGGGTTACTTTCCATCAACAGAGA- 4273 Query 7168 TCCAAAATCA----GAAACACCAAAGTGCAAACATTGGCTCAGGGAGACAATCAAGTTGT 7223 || || | ||||||| ||| || ||| |||||||||||||| ||||| | Sbjct 4272 ---AATATTACAACGAAACACATTAGTAAAAGTATTAGCTCAGGGAGACAACCAAGTAAT 4216 Query 7224 TTGCACC 7230 |||||| Sbjct 4215 ATGCACC 4209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36556087525188