Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_022581.1 Length=11806 Score E Sequences producing significant alignments: (Bits) Value seq121975 125 5e-25 seq34844 80.6 2e-11 >seq121975 Length=4353 Score = 125 bits (138), Expect = 5e-25 Identities = 431/662 (65%), Gaps = 20/662 (3%) Strand=Plus/Plus Query 6525 TGGCCAACTCCGAAACAGATTGATGACTTCGGAGATCACTGGCATGAATTGCCTCTGA-T 6583 ||||| |||| ||| | || || || | |||||| ||||||| | | ||||| | | Sbjct 29 TGGCCTACTCAAAAAGAAATAGAAGATATGGGAGATGTCTGGCATCTACTACCTCTAACT 88 Query 6584 CAAAATTTATGACATCCCAGATTTAATTGACCCATCTGTCATCTACTCTGACAAAAGTCA 6643 ||| ||| || || |||||| | |||||||| ||| | | | || ||||||||||| Sbjct 89 CAATGTTTC-GAGATTCCAGATGTGATTGACCCGGCTGACCTTTTTTCGGACAAAAGTCA 147 Query 6644 TTCAATGGGGAGAGAAGAAGTGTTAAAACATGTTCAAAGGAATCCAA-CACAAGCAATTC 6702 ||| |||| ||| ||| ||||| || | || ||| ||| || || | Sbjct 148 TTCTATGGACCTAGA--------TAACACATGCGCA--GCAAGCCAGGCACCAG-AACAC 196 Query 6703 CTACAAAAAAGGTCTTAGAGACACTCTTACAAAAACCTGCCACAAATTGGCCAGAATTCT 6762 | ||||||||||| ||| ||| | || || |||| | || |||||||| || Sbjct 197 CAACAAAAAAGGTATTAACAACATTACTAGGAACCCCTGATATAATATGGCCAGACTTTG 256 Query 6763 TGTCCTCGATTGAAAAAGATGGCCTA--CCTAAAGACAGCTTGATTATCGGACTGAAGGG 6820 || ||| | | | ||| || | | || || |||| || ||| | | | Sbjct 257 TGAAGAAAATTAATGATGTTGGATTAGACTTGAATTCAC--TGATAATAGGATTAAGAGC 314 Query 6821 AAAAGAGAGGGAACTaaaaaaaGCTGGACGGTTCTTTTCTCTAATGTCCTGGGAATTGAG 6880 |||||| | ||| | |||| ||||| | | || || ||||||||||||| || Sbjct 315 AAAAGAACGAGAAATGAAAATTGCTGGTAGATATTTCGCTTTAATGTCCTGGGAGACTAG 374 Query 6881 GGAGTATTTTGTAATAACTGAATACCTGATCAAAACTCATTACGTCCCTCTCTTTAAAGG 6940 || ||||| ||| || ||| |||||||| ||||| || || || ||||| || Sbjct 375 ATGTTACTTTGTCTTAATCGAGTACTTGATCAAACAACATTATGTACCACTATTTAAGGG 434 Query 6941 ATTGACCATGGCAGATGACATGACGGAGGTCGTCAAGAAGATGTTAGAAAGAAGTCAAGG 7000 ||| ||||||||||| || | | | ||||||||| | |||| | || Sbjct 435 ATTAACCATGGCAGACGATTTAAATACATTAACAAAGAAGATGATGGAAACTTCTATGGG 494 Query 7001 ACAAGGAGAGGATGATTACGAGCACGTCAGCATTGCCAACCACATTGATTATGAAAAATG 7060 ||||| || ||||||| || | | || || || || | ||||| ||||| Sbjct 495 TCAAGGTATAGACAATTACGACTACATTTGTATAGCAAATCATTTAGATTACTCGAAATG 554 Query 7061 GAACAACCATCAAAGGAAAGAGTCTAACGGCCCGGTGTTCAGAGTCATGGGACAATTTCT 7120 ||| ||| |||| || ||||| | || || || |||| ||| |||||||||||||| Sbjct 555 GAATAACAATCAGAGAAAAGAAGCCAATAATCCTGTATTCAAAGTGATGGGACAATTTCT 614 Query 7121 GGGGTACCCTAGTTTGATAGAAAAG-ACCCATGACTTCTTTGAGCAAAGCTTGATCTATT 7179 ||| || || || | ||| || ||||| |||||||| || || ||||| | Sbjct 615 -TGGTGCCGAGAATTTATTTACAAGAACGCATGAAATCTTTGAGAGGAGTTTAATCTACT 673 Query 7180 AT 7181 || Sbjct 674 AT 675 Score = 93.3 bits (102), Expect = 3e-15 Identities = 263/398 (66%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 8667 GCGTACTTAGGATCCAAAACATCAGAGACTACAAGCATCTTGCAACCATGGGAAAAGGAG 8726 || || || ||||| |||||||| || ||| ||||| | || |||||||| ||| Sbjct 2245 GCATATTTGGGATCAAAAACATCTGAATTTACGAGCATATATAGGCCTTGGGAAAAAGAG 2304 Query 8727 ACAAAGATTCCTGTGATTCGTAGAGCTGCTAAATTGAGAGCTGCAATCACCTGGTTTGTA 8786 || || || | || |||||||| || ||| || |||||| |||||| || Sbjct 2305 ACCTCCATACCCATCATAAAAAGAGCTGCAAATTTGCGAAATGCAATAGGTTGGTTTATA 2364 Query 8787 GAGCCTGATTCTCTTTTGGCACAAAGCATCCTGAACAACATTGAAAGTCT--AACTGGAG 8844 | || ||| || | | || || || || ||| || ||| ||| |||| Sbjct 2365 AATAAGGAGTCTAAATTAGGAAAATCGATT-TGT-CAGAATTTAACATCTTTAACAGGAG 2422 Query 8845 AAGATTGGTCTGCTTCAATATCTGGATTCAAAAGGACAGGATCTGCACTACATCGCTTCA 8904 ||||||| ||| || ||||| | ||| ||| || || || || |||||| | ||| Sbjct 2423 AAGATTGTTCTAAGTCCATATCCAGTTTCTCAAGAACTGGTTCAGCCCTACATAGATTCT 2482 Query 8905 CTAGTGCTAGAGTGAGTGCAGGAGGCTTTTCAGCTCAAAGCCCGGCCAGATTGACCAGGA 8964 | || || || || |||||||| | | |||||||||| || | | | | || || | Sbjct 2483 CATGTTCTCGACAAAGCGCAGGAGGATATGCAGCTCAAAGTCCTGTAAAACTAACGAGAA 2542 Query 8965 TGATGGCAACAACAGATACTTTCCGAGAAATTGGGTCA-GATAATTACGATTTTATGTTC 9023 |||| | || || |||||||| || ||||| | | | ||||| || || |||||| Sbjct 2543 TGATTTCTACCACCGATACTTT-AGAAGAATTGAATGATAAAAATTATGACTTCATGTTC 2601 Query 9024 CAATCATTACTACTCTTTGCCCAAATGACTACAGGTGA 9061 || | || ||| ||| | ||||| || || || || Sbjct 2602 CAGACTTTGCTAATCTAATCTCAAATTACAACTGGGGA 2639 >seq34844 Length=5462 Score = 80.6 bits (88), Expect = 2e-11 Identities = 147/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 8841 GGAGAAGATTGGTCTGCTTCAATATCTGGATTCAAAAGGACAGGATCTGCACTACATCGC 8900 ||||||||||||||| ||||| || | || || || || || ||| |||||||| Sbjct 2693 GGAGAAGATTGGTCTAAGTCAATTTCAAGCTTTTCCAGAACCGGGTCAGCATTACATCGC 2634 Query 8901 TTCACTAGTGCTAGAGTGAGTGCAGGAGGCTTTTCAGCTCAAAGCCCGGCCAGATTGACC 8960 || | || ||||| || |||| || | | | |||||||| || | | ||| ||| Sbjct 2633 TTTTCATGTTCTAGACAAAGCACAGGTGGATATGCTGCTCAAAGTCCAGTAAAATTAACC 2574 Query 8961 AGGATGATGGCAACAACAGATACTTTCCGAGAAATTGGGTCAG-ATAATTACGATTTTAT 9019 || ||||| ||||||| ||||| | || |||| | || | ||||| ||||| || Sbjct 2573 AGAATGATATCAACAACGGATACACT-AGACGAATTAAATGAGAAGAATTATGATTTCAT 2515 Query 9020 GTTCCAATCATTACTACTCTTTGCCCAAATGAC 9052 ||| ||| || | || | | | | ||||| || Sbjct 2514 GTTTCAAACACTTTTAATATATTCTCAAATAAC 2482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37574460760760