Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_024473.1 Length=11123 Score E Sequences producing significant alignments: (Bits) Value seq121975 163 2e-36 seq34844 138 8e-29 >seq121975 Length=4353 Score = 163 bits (180), Expect = 2e-36 Identities = 268/381 (70%), Gaps = 4/381 (1%) Strand=Plus/Plus Query 6203 TGATAATTGGATTAAAGGGAAAAGAAAGAGAATTGAAAATAGCTGGGAGATTCTTCTCAT 6262 ||||||| ||||||| | ||||||| ||||| ||||||| ||||| |||| ||| | | Sbjct 296 TGATAATAGGATTAAGAGCAAAAGAACGAGAAATGAAAATTGCTGGTAGATATTTCGCTT 355 Query 6263 TGATGTCATGG-AGATTAAGGGAATATTTTGTGATCACGGAGTACTTAATCAAAACATAC 6321 | ||||| ||| ||| || | || ||||| | | |||||||| |||||| | | Sbjct 356 TAATGTCCTGGGAGACTAGATGT-TACTTTGTCTTAATCGAGTACTTGATCAAACAACAT 414 Query 6322 TACGTTCCCTTGTTTAAGGGGTTAACTATGGCAGATGACCTCACATCGGTGATTAAGAAG 6381 || || || | |||||||| ||||| |||||||| || | | | | | |||||| Sbjct 415 TATGTACCACTATTTAAGGGATTAACCATGGCAGACGATTTAAATACATTAACAAAGAAG 474 Query 6382 ATGATGGACAGTTCATCAGGTCAAGGGCTCGATGATTATTCATCAGTTTGTTTGGCTAAC 6441 |||||||| | ||| |||||||| | || |||| | ||||| | || || Sbjct 475 ATGATGGAAACTTCTATGGGTCAAGGTATAGACAATTACGACTACATTTGTATAGCAAAT 534 Query 6442 CATATTGACTACGAGAAGTGGAATAACCATCAAAGAAAGGAATCTAATGGTCCCATCTTC 6501 ||| | || ||| ||| ||||||||| |||| ||||| ||| | ||| ||| | ||| Sbjct 535 CATTTAGATTACTCGAAATGGAATAACAATCAGAGAAAAGAAGCCAATAATCCTGTATTC 594 Query 6502 AGAGTCATGGGACAGTTTCTGGGTTATCCATCACTCATAGA-GAGAACTCATGAATTTTT 6560 | ||| |||||||| ||||| || | | | | | || | ||||| |||||| | || Sbjct 595 AAAGTGATGGGACAATTTCTTGG-TGCCGAGAATTTATTTACAAGAACGCATGAAATCTT 653 Query 6561 TGAGAAAAGCTTAATTTATTA 6581 ||||| || ||||| || || Sbjct 654 TGAGAGGAGTTTAATCTACTA 674 >seq34844 Length=5462 Score = 138 bits (152), Expect = 8e-29 Identities = 479/727 (66%), Gaps = 44/727 (6%) Strand=Plus/Minus Query 6430 TGTTTGGCTAACCATATTGACTACGAGAAGTGGAATAACCATCAAAGAAAGGAATCTAAT 6489 ||| | |||||||| | || || ||||||||||| |||| || || ||| | || Sbjct 4574 TGTATAGCTAACCACTTGGATTATTCTAAGTGGAATAATAATCAGAGGAAAGAAGCAAAC 4515 Query 6490 GGTCCCATCTTCAGAGTCATGGGACAGTTTCTGGGTT-ATCCATCACTCATAGA-GAGAA 6547 || | |||| |||||||||||| ||| |||| | ||| | | | | ||||| Sbjct 4514 AACCCAGTTTTCAAAGTCATGGGACAATTTATGGGAGCACCCA--ATTTGTTTACGAGAA 4457 Query 6548 CTCATGAATTTTTTGAGAAAAGCTTAATTTATTACAATGGGCGTCCTGATCTAATGACCG 6607 ||||||| |||| || || || ||||||||||| || | |||| ||||||| | Sbjct 4456 CTCATGAGATTTTCGAAAATAGTTTAATTTATTATCCTGCTAGGGGTGATTTAATGACAG 4397 Query 6608 TTCGAAATGG-CACATTGTG--TAATTCCACTAAGCACCGGGTTTGTTGGAATGGGCAAA 6664 | || || || |||| |||||| | | || ||||| ||| | || || | Sbjct 4396 TACGTAACAATCAAGTTGTCAATAATTCAG---ACCTGCGAGTTTGCTGGCAGGGTCAGA 4340 Query 6665 AAGGAGGTTTGGAAGGACTAAGACAAAAGGGATGGAGTATTGT-GAATCTCTTGGTTATT 6723 ||||| |||||||||||||||||||||| ||| || || | | ||| | | Sbjct 4339 GTGGAGGAATGGAAGGACTAAGACAAAAGGGTTGGTCAATCGTAGGGTTACTT--TCCAT 4282 Query 6724 CAA-AGGGAAGCCAAAATT----CGAAACACAGCAGTGAAGGTCTTAGCACAGGGAGATA 6778 ||| || || || ||| ||||||||| ||| || || ||||| |||||||| | Sbjct 4281 CAACAGAGA----AATATTACAACGAAACACATTAGTAAAAGTATTAGCTCAGGGAGACA 4226 Query 6779 ATCAGGTTATATGCACTCAATACAAGACAAAGAAAACCAGATCAGA--ATTG-GAATTAA 6835 | || || |||||||| || |||| | || || || || || | || |||| Sbjct 4225 ACCAAGTAATATGCACCATGTATAAGATA---CAATCCTATTCTGATGATAGCGAGTTAA 4169 Query 6836 -GAGCAGTCTTACATC-AGATGGCAGGAAACAATAATAAA---ATCATGGAAGAAATTAA 6890 || | ||||| | | | ||| |||||| || |||||| ||| ||| | Sbjct 4168 TGAAAA-----ACATCGAAAATATAATAAAAAATAATGAAGCTATCATGAAAGCTATTGA 4114 Query 6891 GAGAGGGACAGAGAAGTTGGGCCTAATCATAAATGATGATGAGACTATGCAATCAGCAGA 6950 ||||| |||| || | || | |||||||| ||||| || || ||| || || Sbjct 4113 AAGAGGAGCAGAAAAACTTGGGTTGGAAATAAATGAAGATGAAACAATTCAAAGTGCCGA 4054 Query 6951 CTATTTAAATTACGGGAAAATTCCAATTTTCCGGGGAGTCATAAGAGGACTAGAAACAAA 7010 ||| | |||||||| ||| |||| || | ||||| ||| | | ||| |||| Sbjct 4053 TTATCTTAATTACGGTAAAGTTCCCATAATTAGGGGAAACATTCATGTATCTGAATCAAA 3994 Query 7011 GAGATGGTCACGGGTA---ACATGTGTCACTAATGATCAGATCCCGACATGTGCCAATTT 7067 ||||||||| || || |||| ||| ||||||| ||| | || || || ||| | Sbjct 3993 GAGATGGTCTCGACTAGCTACAT-TGT--CTAATGACCAGTTGCCTACCCTAGCAAATAT 3937 Query 7068 GATGTCCTCAGTCTCCACCAATGCTTTGACTGTTGCTCATTTTGCTGAAAATCCCATAAA 7127 | || |||||||| | || || | | ||| |||||||| | || | || ||||| Sbjct 3936 ATTATCATCAGTCTCTAGTAACTCTCTAAATGTATCTCATTTTTCGGAGAGCCCAATAAA 3877 Query 7128 TGCAATG 7134 ||| ||| Sbjct 3876 TGCTATG 3870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35394056623156