Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_025341.1 Length=11139 Score E Sequences producing significant alignments: (Bits) Value seq121975 78.8 7e-11 >seq121975 Length=4353 Score = 78.8 bits (86), Expect = 7e-11 Identities = 242/368 (66%), Gaps = 6/368 (2%) Strand=Plus/Plus Query 6261 TCATTGATCATCGGATTGAAAGGGAAAGAGAGAGAAGTGAAAGTAAAAGGACGGTTCTTT 6320 ||| |||| || ||||| | || ||||| ||||| ||||| | || | | || Sbjct 292 TCACTGATAATAGGATTAAGAGCAAAAGAACGAGAAATGAAAATTGCTGGTAGATATTTC 351 Query 6321 TCACTCATGTCGTGGAA-ACTAAGAGAATATTTTGTTGTCACAGAATACCTAATCAAAGA 6379 | | ||||| ||| | |||| || || ||||| | | || ||| | |||||| | Sbjct 352 GCTTTAATGTCCTGGGAGACTA-GATGTTACTTTGTCTTAATCGAGTACTTGATCAAACA 410 Query 6380 ACATTTCGTCCCTCTCTTCAATGGATTGACTATGGCGGATGACATGACCACCGTAATATC 6439 ||||| || || || || || ||||| || ||||| || || | | || ||| | Sbjct 411 ACATTATGTACCACTATTTAAGGGATTAACCATGGCAGACGATTTAAATACATTAACAAA 470 Query 6440 AAAACTAATGGATCGCACTCAGGGCCAAGGAGGAGAGGACTACACCCAAGTTTGCATTGC 6499 || | ||||| || ||| ||||| ||| | ||| | | |||| || || Sbjct 471 GAAGATGATGGAAACTTCTATGGGTCAAGGTATAGACAATTACGACTACATTTGTATAGC 530 Query 6500 TAATCATATCGATTATGAAAAGTGGAACAATCATCAGAGAAAGCGTGCAACCGGACCTGT 6559 |||||| | ||||| || ||||| || |||||||||| || | ||||| Sbjct 531 AAATCATTTAGATTACTCGAAATGGAATAACAATCAGAGAAAAGAAGCCAATAATCCTGT 590 Query 6560 GTTCATAGTCATGGGACAATTCCTTGGATTTCCTA-AACTGATCTA-TAGAACACATGAG 6617 |||| ||| ||||||||||| ||||| | || | || | || || ||||| ||||| Sbjct 591 ATTCAAAGTGATGGGACAATTTCTTGG--TGCCGAGAATTTATTTACAAGAACGCATGAA 648 Query 6618 TTCTTTGA 6625 ||||||| Sbjct 649 ATCTTTGA 656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35445134904564