Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_025392.1 Length=11121 Score E Sequences producing significant alignments: (Bits) Value seq121975 170 1e-38 seq34844 118 8e-23 >seq121975 Length=4353 Score = 170 bits (188), Expect = 1e-38 Identities = 284/405 (70%), Gaps = 8/405 (2%) Strand=Plus/Plus Query 6263 TGATAATCGGACTCAAAGGAAAAGAGAGAGAATTGAAGATTGCAGGTAGATTCTTTTCAT 6322 ||||||| ||| | | || |||||| ||||| |||| ||||| ||||||| || | | Sbjct 296 TGATAATAGGATTAAGAGCAAAAGAACGAGAAATGAAAATTGCTGGTAGATATTTCGCTT 355 Query 6323 TGATGTCATGGAAATTGCGAGAATATTTTGTGATAACCGAATATCTGATCAAAACGCATT 6382 | ||||| ||| | || || ||||| ||| ||| || |||||||| |||| Sbjct 356 TAATGTCCTGGGAGACTAGATGTTACTTTGTCTTAATCGAGTACTTGATCAAACAACATT 415 Query 6383 TTGTCCCTCTCTTTTATGGACTCACCATGGCTGATGATATGACTTCAGTCATCAAGAAAA 6442 ||| || || ||| | ||| | |||||||| || ||| | | | || | | ||||| | Sbjct 416 ATGTACCACTATTTAAGGGATTAACCATGGCAGACGATTTAAATACATTAACAAAGAAGA 475 Query 6443 TGCTAGAAAGTTCATCCGGTCAAGGGTTG---AATGACTATTCTGCAATCTCAATCGCAA 6499 || | |||| ||| |||||||| | ||| || | || || | | || |||| Sbjct 476 TGATGGAAACTTCTATGGGTCAAGGTATAGACAATTACGA--CTACATT-TGTATAGCAA 532 Query 6500 ATCACATAGATTATGAGAAATGGAACAATCACCAGAGAAGAACATCAAACGAACCTGTAT 6559 |||| ||||||| ||||||||| || | ||||||| | | | || | ||||||| Sbjct 533 ATCATTTAGATTACTCGAAATGGAATAACAATCAGAGAAAAGAAGCCAATAATCCTGTAT 592 Query 6560 TCAAAGTGATGGGACAATTTCTGGGATATCCA-AATTTGATATCACGCACCCATGAATTC 6618 |||||||||||||||||||||| || | | | ||||| | || | || |||||| || Sbjct 593 TCAAAGTGATGGGACAATTTCTTGG-TGCCGAGAATTTATTTACAAGAACGCATGAAATC 651 Query 6619 TTTGAGAAGAGTTTGATTTATTATAATGGAAGACCCGATTTGATG 6663 ||||||| |||||| || || ||| | |||| ||||| ||| Sbjct 652 TTTGAGAGGAGTTTAATCTACTATCCAGCAAGAGGTGATTTAATG 696 >seq34844 Length=5462 Score = 118 bits (130), Expect = 8e-23 Identities = 365/554 (66%), Gaps = 18/554 (3%) Strand=Plus/Minus Query 6493 ATCGCAAATCACATAGATTATGAGAAATGGAACAATCACCAGAGAAGAACATCAAACGAA 6552 || || || ||| | |||||| || ||||| ||| | ||||| | | | ||||| | Sbjct 4571 ATAGCTAACCACTTGGATTATTCTAAGTGGAATAATAATCAGAGGAAAGAAGCAAACAAC 4512 Query 6553 CCTGTATTCAAAGTGATGGGACAATTTCTGGGATATCCAAATTTGATATCACGCACCCAT 6612 || || |||||||| |||||||||||| ||||| || |||||| | | | || ||| Sbjct 4511 CCAGTTTTCAAAGTCATGGGACAATTTATGGGAGCACCCAATTTGTTTACGAGAACTCAT 4452 Query 6613 GAATTCTTTGAGAAGAGTTTGATTTATTATAATGGAAGACCCGATTTGATGAGAGTCCG- 6671 || | || || || ||||| ||||||||| || || ||||| |||| ||| || Sbjct 4451 GAGATTTTCGAAAATAGTTTAATTTATTATCCTGCTAGGGGTGATTTAATGACAGTACGT 4392 Query 6672 --GAATGGAGTGGTTGAGAATTCCTCAGATACTAGAGTATGTTGGAATGGACAAGCCGGG 6729 ||| ||| || | ||| ||||| |||| || ||| | || || || Sbjct 4391 AACAATCAAGTTGTCAATAAT---TCAGACCTGCGAGTTTGCTGGCAGGGTCAGAGTGGA 4335 Query 6730 GGTCTAGAGGGTTTGAGACAGAAGGGCTGGAGCATCCTAAATTT--GTTGGTTATACAGA 6787 || | || || | ||||| ||||| ||| ||| || || || | ||||| Sbjct 4334 GGAATGGAAGGACTAAGACAAAAGGGTTGGTCAATCGTAGGGTTACTTTCCATCAACAGA 4275 Query 6788 GGGAATCCAAAATCCGTAATACATCTGTCAAGGTATTGGCACAAGGAGACAATCAAGTAA 6847 | ||| | | || || |||| || || ||||| || || |||||||| ||||||| Sbjct 4274 -GAAATATTACA-ACGAAACACATTAGTAAAAGTATTAGCTCAGGGAGACAACCAAGTAA 4217 Query 6848 TTTGTACCCAATACAAGACTAAACAACATCGCTCGGA-GATTGAG-CTTA--GAGGGGCA 6903 | || ||| || ||| | |||| || || ||| | | ||| || || Sbjct 4216 TATGCACCATGTATAAG---ATACAATCCTATTCTGATGATAGCGAGTTAATGAAAAACA 4160 Query 6904 TTGGAACAGATGAAGTCGAACAATCAAACAATAATGGATTCAATTGAGCGGGGAACAAAC 6963 | ||| | || | || ||| || | || ||| | | ||||| | ||| || | Sbjct 4159 -TCGAAAATATAATAAAAAATAATGAAGCTATCATGAAAGCTATTGAAAGAGGAGCAGAA 4101 Query 6964 AGGCTTGGGCTTTTAATCAATCAAGATGAAACAATGCAATCGGCTGATTATCTTAATTAC 7023 | |||||| | ||| ||| ||||||||||||| ||| || ||||||||||||||| Sbjct 4100 AAACTTGGGTTGGAAATAAATGAAGATGAAACAATTCAAAGTGCCGATTATCTTAATTAC 4041 Query 7024 GGTAAAGTTCCAAT 7037 ||||||||||| || Sbjct 4040 GGTAAAGTTCCCAT 4027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35387671837980