Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_025406.1 Length=11141 Score E Sequences producing significant alignments: (Bits) Value seq121975 149 4e-32 seq34844 122 6e-24 >seq121975 Length=4353 Score = 149 bits (164), Expect = 4e-32 Identities = 437/655 (67%), Gaps = 40/655 (6%) Strand=Plus/Plus Query 6031 TGGCCTACTCCAAAACAGATAGAAGACTTCGGAGACCATTGGCATGAATTGCCACTTTC- 6089 |||||||||| |||| | |||||||| | ||||| |||||| | | || || | Sbjct 29 TGGCCTACTCAAAAAGAAATAGAAGATATGGGAGATGTCTGGCATCTACTACCTCTAACT 88 Query 6090 CAAGATATACGAGATACCTGATTTAATAGATCCCTCTGTGATTTACTCTGACAAGAGTCA 6149 ||| | | |||||| || ||| | || || || ||| ||| || ||||| ||||| Sbjct 89 CAATGTTT-CGAGATTCCAGATGTGATTGACCCGGCTGACCTTTTTTCGGACAAAAGTCA 147 Query 6150 TTCCATGAATCGAAGTGAGATTATACAACACATATTGGAGCACCCTCTAAAGCCGATC-C 6208 ||| ||| | | | ||| ||||||| | |||| | | | || | | Sbjct 148 TTCTATGGACCTA-----GAT-----AACACATGC-GCAGCAAGCCAGGCACCAGAACAC 196 Query 6209 CTACAAGAAAAGTACTAAGAACATTATTGGAAAAACCAGCTACAGACTGGCCATCATTCT 6268 | |||| ||| ||| ||| ||||||| | | || || | || | |||||| || Sbjct 197 CAACAAAAAAGGTATTAACAACATTACTAGGAACCCCTGATATAATATGGCCAGACTTTG 256 Query 6269 TGAAAAGGATAGATGAAGAAGGTCTAAA--TGAAGAGGCTTTAGTCATAGGATTAAAAGG 6326 |||| | || |||| | || || | |||| || | |||||||||| || Sbjct 257 TGAAGAAAATTAATGATGTTGGATTAGACTTGAATTCACTGA--TAATAGGATTAAGAGC 314 Query 6327 TAAGGAAAGAGAGCTGAAACAAGCAGGTAGATTCTTTTCATTGATGTCATGGGAGTTACG 6386 || ||| |||| ||||| || ||||||| || | || ||||| |||||| || Sbjct 315 AAAAGAACGAGAAATGAAAATTGCTGGTAGATATTTCGCTTTAATGTCCTGGGAG--ACT 372 Query 6387 AGAG--TACTTTGTCATTACCGAATATTTAATAAAACACCATTTTGTACCTCTATTTAAG 6444 ||| ||||||||| | | ||| || || || ||||| |||| |||||| ||||||||| Sbjct 373 AGATGTTACTTTGTCTTAATCGAGTACTTGATCAAACAACATTATGTACCACTATTTAAG 432 Query 6445 GGATTAACAATGGCAGATGATATGACAGAAGTGATCAAA-AAGATGCTGGAAAGAAGTCA 6503 |||||||| |||||||| ||| | | | | | | |||| |||||| |||||| | Sbjct 433 GGATTAACCATGGCAGACGAT-TTAAATACATTAACAAAGAAGATGATGGAAACTTCTAT 491 Query 6504 AGGCCAAG-----GAGAATTA-GACTATCAACATGTGAGCATAGCGAACCATATAGATTA 6557 || |||| || ||||| |||| |||| | | ||||| || ||| ||||||| Sbjct 492 GGGTCAAGGTATAGACAATTACGACT----ACATTT--GTATAGCAAATCATTTAGATTA 545 Query 6558 TGAAAAGTGGAACAATCATCAAAGGAAAGAATCAAATGGACCAGTTTTCCGTGTGATGGG 6617 || ||||| || |||| || |||||| | ||| || || ||| |||||||| Sbjct 546 CTCGAAATGGAATAACAATCAGAGAAAAGAAGCCAATAATCCTGTATTCAAAGTGATGGG 605 Query 6618 CCAA-TTCTTGGGCTATCCATCTTTGATAGA-GAGAACGCATGAGTTCTTTGAGA 6670 ||| ||||||| | | | || || | ||||||||||| ||||||||| Sbjct 606 ACAATTTCTTGG--TGCCGAGAATTTATTTACAAGAACGCATGAAATCTTTGAGA 658 >seq34844 Length=5462 Score = 122 bits (134), Expect = 6e-24 Identities = 432/669 (65%), Gaps = 26/669 (4%) Strand=Plus/Minus Query 6538 ATAGCGAACCATATAGATTATGAAAAGTGGAACAATCATCAAAGGAAAGAATCAAATGGA 6597 ||||| ||||| | |||||| |||||||| ||| |||| ||||||||| |||| Sbjct 4571 ATAGCTAACCACTTGGATTATTCTAAGTGGAATAATAATCAGAGGAAAGAAGCAAACAAC 4512 Query 6598 CCAGTTTTCCGTGTGATGGGCCAATTCTTGGGCTATCCATCTTTGATAGAGAGAACGCAT 6657 ||||||||| || ||||| ||||| |||| || |||| | |||||| ||| Sbjct 4511 CCAGTTTTCAAAGTCATGGGACAATTTATGGGAGCACCCAATTTGTTTACGAGAACTCAT 4452 Query 6658 GAGTTCTTTGAGAAAAGTCTTGTTTATTACAATGGTAGACCAGACTTGATGAAGGTAGAA 6717 ||| | || || || ||| | ||||||| || ||| || || |||| ||| Sbjct 4451 GAGATTTTCGAAAATAGTTTAATTTATTATCCTGCTAGGGGTGATTTAATGACAGTACGT 4392 Query 6718 AATGGTGTAGTATTGAATAAAACAGATAATTTAGTTTGCTGGAATGGTCAAGCAGGGGGG 6777 || | ||| | ||||| |||| |||||||||| | ||||| || || Sbjct 4391 AACAATCAAGTTGTCAATAATTCAGACCTGCGAGTTTGCTGGCAGGGTCAGAGTGGAGGA 4332 Query 6778 TTAGAGGGACTGAGACAAAAAGGTTGGAGTATACTCAACTTGTTGG-TGATTAGACGTGA 6836 | || ||||| |||||||| |||||| |||| | || || | | | | | | Sbjct 4331 ATGGAAGGACTAAGACAAAAGGGTTGG-------TCAA-TCGTAGGGTTACTTTCCATCA 4280 Query 6837 GTCCA-AAATC------CGCAATACAAGGGTTCAGACATTAGCACAGGGAGACAATCAAG 6889 | |||| || || ||| || | |||||| ||||||||||| |||| Sbjct 4279 ACAGAGAAATATTACAACGAAACACATTAGTAAAAGTATTAGCTCAGGGAGACAACCAAG 4220 Query 6890 TGATCTGTACACAGTACAGATTACAA-CCTACTAGGAATGAGGATGAGCTAATTTATGCG 6948 | || || || ||| | ||||| |||| | ||| ||| ||| | || ||| Sbjct 4219 TAATATGCACCATGTATAAGATACAATCCTATTC----TGATGAT-AGCGAGTTAATGAA 4165 Query 6949 TTAAATCAAA----TCAAAGATAATAATGCTGTTATAATGTCAGCCATCGAAACAGGAGT 7004 | ||| || | | | | ||||||| | ||| ||| ||| || |||| ||||| Sbjct 4164 AAACATCGAAAATATAATAAAAAATAATGAAGCTATCATGAAAGCTATTGAAAGAGGAGC 4105 Query 7005 GAATAAACTAGGTCTGATCATCAATAATGATGAAACAATACAAAGTGCAGATTTCCTTAC 7064 | ||||| || || || ||| | ||||||||||| |||||||| |||| |||| Sbjct 4104 AGAAAAACTTGGGTTGGAAATAAATGAAGATGAAACAATTCAAAGTGCCGATTATCTTAA 4045 Query 7065 ATATGGGAAAGTCCCAATTTTCAGGGGTAACATAAGAGGTTTAGAGACAAAAAGGTGGTC 7124 || || ||||| || || | ||||| ||||| | | || |||| || ||||| Sbjct 4044 TTACGGTAAAGTTCCCATAATTAGGGGAAACATTCATGTATCTGAATCAAAGAGATGGTC 3985 Query 7125 TCGGGTGACTTGTGTCACAAATGATCAATTGCCATCTTTGGCCAATGTCTTATCTTCTGT 7184 ||| | || | | ||||| || ||||| | | || ||| | ||||| || || Sbjct 3984 TCGACTAGCTACATTGTCTAATGACCAGTTGCCTACCCTAGCAAATATATTATCATCAGT 3925 Query 7185 CTCAACTAA 7193 ||| | ||| Sbjct 3924 CTCTAGTAA 3916 Score = 104 bits (114), Expect = 2e-18 Identities = 129/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 8398 AGGACAGGATCTGCACTGCATAGGTTTTCCAGTTCTAGAATAAGTTCAGGAGGATTTGCT 8457 || || || || ||| | ||| | ||||| |||||||| ||| |||| |||| |||| Sbjct 2657 AGAACCGGGTCAGCATTACATCGCTTTTCATGTTCTAGACAAAGCACAGGTGGATATGCT 2598 Query 8458 GCCCAAAGTCCTGCCCGACTAACCAGAATGATGTCTACTACAGATACATTTAGAGACATT 8517 || |||||||| | | ||||||||||||| || || || |||||| |||| ||| Sbjct 2597 GCTCAAAGTCCAGTAAAATTAACCAGAATGATATCAACAACGGATACA-CTAGACGAATT 2539 Query 8518 GGA-GATGACAATTATGATTTCATGTTTCAAAGTCTTCTGATATTCTCACAAAT 8570 | || | |||||||||||||||||||||| ||| | |||| || ||||| Sbjct 2538 AAATGAGAAGAATTATGATTTCATGTTTCAAACACTTTTAATATATTCTCAAAT 2485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35451519689740