Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_028230.1 Length=12020 Score E Sequences producing significant alignments: (Bits) Value seq121975 143 2e-30 seq34844 84.2 2e-12 >seq121975 Length=4353 Score = 143 bits (158), Expect = 2e-30 Identities = 269/389 (69%), Gaps = 10/389 (3%) Strand=Plus/Plus Query 7189 TGATAATCGGATTAAAAGCAAAAGAAAGGGAGATGAAAAGAATCGGAAGAtttttttCAT 7248 ||||||| ||||||| |||||||||| | || ||||||| || |||| ||| | | Sbjct 296 TGATAATAGGATTAAGAGCAAAAGAACGAGAAATGAAAATTGCTGGTAGATATTTCGCTT 355 Query 7249 TAATGTCTTGGGAATTAAGAGAATATTTTGTTTCTACTGAATATCTGATaaaaaaaTATT 7308 ||||||| ||||| ||| || ||||| | | || || |||| ||| || ||| Sbjct 356 TAATGTCCTGGGAGACTAGATGTTACTTTGTCTTAATCGAGTACTTGATCAAACAACATT 415 Query 7309 ATGTTCCATTATTCAAGGGATTGACAATGGCAGATGGATTAATGACAGTGGTGAAGAAAA 7368 |||| ||| |||| |||||||| || |||||||| | |||| ||| | ||||| | Sbjct 416 ATGTACCACTATTTAAGGGATTAACCATGGCAGACGATTTAAATACATTAACAAAGAAGA 475 Query 7369 TGATTGATTCATC-ATGCGGGCAAGGAAATCTAGA---TTACAACACTGTATCAATTGCC 7424 |||| || | || ||| || ||||| | |||| |||| || | | || || Sbjct 476 TGATGGAAACTTCTATG-GGTCAAGGTA---TAGACAATTACGACTACATTTGTATAGCA 531 Query 7425 AATCATATAGATTATACAAAGTGGAACAATCACCAGAGAAG-GAAGTCCAATCACCCTGT 7483 |||||| ||||||| | || ||||| || | ||||||| |||| ||||| | ||||| Sbjct 532 AATCATTTAGATTACTCGAAATGGAATAACAATCAGAGAAAAGAAG-CCAATAATCCTGT 590 Query 7484 TTTTACTGTGATGGGACAGTTTTTGGGGTACCCGAACCTGATCACTAGAACTCATGAGTT 7543 || | ||||||||||| ||| | || | ||| | | || ||||| ||||| | Sbjct 591 ATTCAAAGTGATGGGACAATTTCTTGGTGCCGAGAATTTATTTACAAGAACGCATGAAAT 650 Query 7544 CTTCGAAAAAAGCTGGATATATTATGCAG 7572 ||| || | || | || || ||| ||| Sbjct 651 CTTTGAGAGGAGTTTAATCTACTATCCAG 679 >seq34844 Length=5462 Score = 84.2 bits (92), Expect = 2e-12 Identities = 104/137 (76%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 7434 GATTATACAAAGTGGAACAATCACCAGAG-AAGGAAGTCCAATCACCCTGTTTTTACTGT 7492 |||||| | |||||||| ||| | ||||| || |||| | || |||| ||||| | || Sbjct 4556 GATTATTCTAAGTGGAATAATAATCAGAGGAAAGAAG-CAAACAACCCAGTTTTCAAAGT 4498 Query 7493 GATGGGACAGTTTTTGGG-GTACCCGAACCTGATCACTAGAACTCATGAGTTCTTCGAAA 7551 |||||||| ||| |||| | |||| || || | || |||||||||||| | ||||||| Sbjct 4497 CATGGGACAATTTATGGGAGCACCC-AATTTGTTTACGAGAACTCATGAGATTTTCGAAA 4439 Query 7552 AAAGCTGGATATATTAT 7568 | || | || |||||| Sbjct 4438 ATAGTTTAATTTATTAT 4422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 38257632774592