Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_028234.1 Length=12162 Score E Sequences producing significant alignments: (Bits) Value seq121975 154 1e-33 seq34844 93.3 3e-15 >seq121975 Length=4353 Score = 154 bits (170), Expect = 1e-33 Identities = 265/377 (70%), Gaps = 6/377 (2%) Strand=Plus/Plus Query 7385 ATTGGATTAAAGGCCAAAGAAAGAGAACTGAAAAGGAAAGGTAGAtttttttCTCTAATG 7444 || ||||||| || |||||| ||||| |||||| ||||||| ||| || ||||| Sbjct 301 ATAGGATTAAGAGCAAAAGAACGAGAAATGAAAATTGCTGGTAGATATTTCGCTTTAATG 360 Query 7445 ACTTGG-AGATTGAGAGAATACTTTGTTGCAACTGAATTCCTGATTAAAAAACATTTTGT 7503 | ||| ||| | ||| |||||||| || || | | |||| ||| |||||| ||| Sbjct 361 TCCTGGGAGACT-AGATGTTACTTTGTCTTAATCGAGTACTTGATCAAACAACATTATGT 419 Query 7504 CCCTCTATTTGAGGGACTAACTATGGCAGATGATTTGATCACAGTTGTGaaaaaaaTGAT 7563 || |||||| ||||| |||| |||||||| ||||| | ||| | || || ||||| Sbjct 420 ACCACTATTTAAGGGATTAACCATGGCAGACGATTTAAATACATTAACAAAGAAGATGAT 479 Query 7564 TCGAAACTCAAATGGA-CAAGGATTAAATGATTAC-AGTAGAATAACTATAGCAAATCAT 7621 |||||| |||| ||||| || | ||||| | || | | ||||||||||||| Sbjct 480 G-GAAACTTCTATGGGTCAAGGTATAGACAATTACGACTACATTTG-TATAGCAAATCAT 537 Query 7622 ATTGATTATGAAAAGTGGAATAATCATCAAAGAAAGGAATCAAATAAATATGTTTTTAAA 7681 | ||||| || |||||||| |||| ||||| ||| | ||||| ||| || ||| Sbjct 538 TTAGATTACTCGAAATGGAATAACAATCAGAGAAAAGAAGCCAATAATCCTGTATTCAAA 597 Query 7682 GTTATGGGGCAATTCTTAGGTTATCCTAATTTAATTGTCAGAACCCATGAGTTTTTTGAA 7741 || ||||| ||||| | ||| |||||| || ||||| ||||| | ||||| Sbjct 598 GTGATGGGACAATTTCTTGGTGCCGAGAATTTATTTACAAGAACGCATGAAATCTTTGAG 657 Query 7742 AAAAGTGTCATATACTA 7758 | ||| | || ||||| Sbjct 658 AGGAGTTTAATCTACTA 674 >seq34844 Length=5462 Score = 93.3 bits (102), Expect = 3e-15 Identities = 443/690 (64%), Gaps = 18/690 (3%) Strand=Plus/Minus Query 7609 TATAGCAAATCATATTGATTATGAAAAGTGGAATAATCATCAAAGAAAGGAATCAAATAA 7668 |||||| || || | |||||| |||||||||||| |||| || || ||| |||| || Sbjct 4572 TATAGCTAACCACTTGGATTATTCTAAGTGGAATAATAATCAGAGGAAAGAAGCAAACAA 4513 Query 7669 ATATGTTTTTAAAGTTATGGGGCAATTCTTAGGTTATCCTAATTTAATTGTCAGAACCCA 7728 ||||| ||||| ||||| ||||| | || || ||||| || ||||| || Sbjct 4512 CCCAGTTTTCAAAGTCATGGGACAATTTATGGGAGCACCCAATTTGTTTACGAGAACTCA 4453 Query 7729 TGAGTTTTTTGAAAAAAGTGTCATATACTACGCTGGGCGAGCAGACTGGATAGGAGTAAA 7788 |||| |||| ||||| ||| | || || || ||| | | || | || |||| Sbjct 4452 TGAGATTTTCGAAAATAGTTTAATTTATTATCCTGCTAGGGGTGATTTAATGACAGTACG 4393 Query 7789 GAGAAATGAGTTTATAAATTTAACAGAACATAGATCATTTTGGAATGGACAAAAAGGAGG 7848 | ||| | || | ||| |||| | || | ||| | || || | ||||| Sbjct 4392 TAACAATCAAGTTGTCAATAATTCAGACCTGCGAGTTTGCTGGCAGGGTCAGAGTGGAGG 4333 Query 7849 ACTAGAGGGATTAAGGCAAAAAGGGTGGTCCA-CTTTGAATTACTTAGTTATTGAGAGAG 7907 | | || ||| |||| ||||| || ||||| | | | | |||||| || | |||| Sbjct 4332 AATGGAAGGACTAAGACAAAAGGGTTGGTCAATCGTAGGGTTACTT-TCCATCAACAGAG 4274 Query 7908 AAAGCAATTTGA--GAAATACAGATGTCAAAGTCTTAGCACAAGGAGATAATCAAACTAT 7965 ||| ||| | |||| ||| || ||||| ||||| || ||||| || ||| || Sbjct 4273 AAA--TATTACAACGAAACACATTAGTAAAAGTATTAGCTCAGGGAGACAACCAAGTAAT 4216 Query 7966 CACTACAAACTATGTGTTGAGAACTTAT--AGAACAGATCAAGAGCTTCAAAGCCACATA 8023 || | ||| | | | | ||| || | | | || | ||| |||| Sbjct 4215 ATGCACCATGTATAAGATACAATCCTATTCTGATGATAGCGAGTTAATGAAA--AACATC 4158 Query 8024 GAAGACATCTGCCAAAATAATAATATAATACTACAGGAAATTATAAAAGGAACAGGAAAA 8083 ||| | || |||||||| | || | | | ||| || |||| ||| |||| Sbjct 4157 GAAAATATAATAAAAAATAATGAAGCTATCATGAAAGCTATTGAAAGAGGAGCAGAAAAA 4098 Query 8084 -TTGGGTCTTATCATAAATAAAAATGAAACAGTCCAGAGTGCAGATTATATGAACTATGG 8142 |||||| | |||||| || |||||||| | || ||||| |||||| | || || || Sbjct 4097 CTTGGGT-TGGAAATAAATGAAGATGAAACAATTCAAAGTGCCGATTATCTTAATTACGG 4039 Query 8143 GAAAGTTCCCATTTTTCGGGGAATAATCCAAGGAT-TGAACCCCAAAAGATGGTCCAGAG 8201 ||||||||||| || |||||| || || | || |||| | || |||||||| || Sbjct 4038 TAAAGTTCCCATAATTAGGGGAAACATTCATGTATCTGAA-TCAAAGAGATGGTCTCGAC 3980 Query 8202 CA--AACTTTGTAACTAACGACCAACTACCAACTTTTTCCAACGTTTTATCATCTATCTC 8259 | || |||| |||| ||||| | || || | | || | |||||||| |||| Sbjct 3979 TAGCTACATTGT--CTAATGACCAGTTGCCTACCCTAGCAAATATATTATCATCAGTCTC 3922 Query 8260 TACAAACAGCCTGACTGTTGCCCATTATTC 8289 || ||| || | ||| | |||| ||| Sbjct 3921 TAGTAACTCTCTAAATGTATCTCATTTTTC 3892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 38710952522088