Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_028235.1 Length=12994 Score E Sequences producing significant alignments: (Bits) Value seq121975 154 1e-33 seq34844 118 9e-23 >seq121975 Length=4353 Score = 154 bits (170), Expect = 1e-33 Identities = 288/423 (68%), Gaps = 0/423 (0%) Strand=Plus/Plus Query 8127 CCAACAAAACGTGTGTTACAAACATTATTAGAAAAACCTGAAACCAATTGGGTATCATTT 8186 ||||||||| || ||| ||||||| ||| || ||||| | | ||| | ||| Sbjct 196 CCAACAAAAAAGGTATTAACAACATTACTAGGAACCCCTGATATAATATGGCCAGACTTT 255 Query 8187 TTACAAAAGATAAATGATGAAGGGTTAGATTTGGATTCTCTAATTATTGGGTTAAAAGCC 8246 | | || || ||||||| || ||||| ||| |||| || || || || |||| ||| Sbjct 256 GTGAAGAAAATTAATGATGTTGGATTAGACTTGAATTCACTGATAATAGGATTAAGAGCA 315 Query 8247 AAAGAAAGAGAAATGAAGAGAATTGGGAGAtttttttCATTAATGTCTTGGGAGTTGAGA 8306 |||||| |||||||||| | ||| |||| ||| | |||||||| |||||| ||| Sbjct 316 AAAGAACGAGAAATGAAAATTGCTGGTAGATATTTCGCTTTAATGTCCTGGGAGACTAGA 375 Query 8307 GAATATTTTGTATATACAGAGTATTTAATAAAGGAGTATTTTGTTCCATTATTCCATGGC 8366 || ||||| | | ||||| || || || | ||| ||| ||| |||| | || Sbjct 376 TGTTACTTTGTCTTAATCGAGTACTTGATCAAACAACATTATGTACCACTATTTAAGGGA 435 Query 8367 TTGACCATGGCAGATGACCTGCAGGAAGTTATTAAGAAAATGTTGGAGAATGTAAGTGGA 8426 || ||||||||||| || | | | | | ||||| ||| |||| | | | || Sbjct 436 TTAACCATGGCAGACGATTTAAATACATTAACAAAGAAGATGATGGAAACTTCTATGGGT 495 Query 8427 CAAGGGTTGGATAATTACGAGTATATATCAATTGCGAATCATATTGATTATGAAAAATGG 8486 ||||| | || |||||||| || || | || || |||||| | ||||| |||||| Sbjct 496 CAAGGTATAGACAATTACGACTACATTTGTATAGCAAATCATTTAGATTACTCGAAATGG 555 Query 8487 AACAATCATCAACGATACGAATCTAATTGTCATATTTTTAAAGTTATGGGTCAATGTTTT 8546 || || |||| || | ||| | ||| || | | || ||||| ||||| |||| | || Sbjct 556 AATAACAATCAGAGAAAAGAAGCCAATAATCCTGTATTCAAAGTGATGGGACAATTTCTT 615 Query 8547 GGT 8549 ||| Sbjct 616 GGT 618 >seq34844 Length=5462 Score = 118 bits (130), Expect = 9e-23 Identities = 243/354 (69%), Gaps = 22/354 (6%) Strand=Plus/Minus Query 8673 GTTTGTTGGAATGGTCAAGCTGGAGGATTGGAAGGATTGAGGCAAAAGGGTTGGTCAATT 8732 ||||| ||| | ||||| ||||||| |||||||| | || ||||||||||||||||| Sbjct 4358 GTTTGCTGGCAGGGTCAGAGTGGAGGAATGGAAGGACTAAGACAAAAGGGTTGGTCAATC 4299 Query 8733 GTAAATCTACTTGTTATAGAAAGAGAATCCAAAATTA----GGAATACGTTAGTCAAAAT 8788 ||| ||||| || | |||||| | |||| | || || ||||| ||| | Sbjct 4298 GTAGGGTTACTTTCCATCAACAGAGAA----ATATTACAACGAAACACATTAGTAAAAGT 4243 Query 8789 TTTGGCTCAAGGAGACAATCAGACCATCAGCACTTGTTATGAGATGGTAAGCACTTTTTC 8848 || ||||| |||||||| || || |||| ||| |||| | | | ||| Sbjct 4242 ATTAGCTCAGGGAGACAACCAAGTAATATGCACCATGTATAAGATACAATCC---TATTC 4186 Query 8849 AATTGAGGA-AGAGGATT--TGGAAATTA---ATAAGATTGTTCAAAACAATAATGCTGT 8902 ||| || || | || || ||| | | || || | |||| ||| | ||| | Sbjct 4185 ---TGATGATAGCGAGTTAATGAAAAACATCGAAAATATAATAAAAAATAATGAAGCTAT 4129 Query 8903 CATGAAAGCAATTCGCAATGGGA-CTGAAAAACTAGGGTTGTTGATTAATGATGATGAAA 8961 ||||||||| ||| | || ||| | |||||||| |||||| || ||||| ||||||| Sbjct 4128 CATGAAAGCTATT-GAAAGAGGAGCAGAAAAACTTGGGTTGGAAATAAATGAAGATGAAA 4070 Query 8962 CTATGGTCAGTGCCGATTATTTAAATTATGGGAAAGTTCCTATATTTCGTGGAA 9015 | || |||||||||||| | ||||| || |||||||| ||| || | |||| Sbjct 4069 CAATTCAAAGTGCCGATTATCTTAATTACGGTAAAGTTCCCATAATTAGGGGAA 4016 Score = 80.6 bits (88), Expect = 2e-11 Identities = 107/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 10330 GAACAGGATCAGCATTGCATAGATTCACTTGTGCAAGACAATCCAATGGAGGATTTAGTG 10389 |||| || |||||||| ||| | || | ||| | |||||| || || |||| | || Sbjct 2656 GAACCGGGTCAGCATTACATCGCTTTTCATGTTCTAGACAAAGCACAGGTGGATATGCTG 2597 Query 10390 CAAATTCTCCAACAAATTTAACTTGGATGATTTGCACAACTGATACAATGGAAGCAATTA 10449 | | |||| ||| ||||| | ||||| | ||||| |||||| | || | | | | Sbjct 2596 CTCAAAGTCCAGTAAAATTAACCAGAATGATATCAACAACGGATACACTAGACGAATTAA 2537 Query 10450 ATGACAAAAATTATGATTTTATGTTTCAA 10478 |||| || ||||||||||| ||||||||| Sbjct 2536 ATGAGAAGAATTATGATTTCATGTTTCAA 2508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41367023155304