Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_028236.1 Length=11072 Score E Sequences producing significant alignments: (Bits) Value seq121975 87.8 1e-13 >seq121975 Length=4353 Score = 87.8 bits (96), Expect = 1e-13 Identities = 254/384 (66%), Gaps = 8/384 (2%) Strand=Plus/Plus Query 6221 CTGATCATCGGATTAAAGGGTAAGGAGAGAGAAGTCAAAGTAAAAGGAAGATTCTTTTCC 6280 ||||| || ||||||| | || || ||||| | ||| | || |||| || | Sbjct 295 CTGATAATAGGATTAAGAGCAAAAGAACGAGAAATGAAAATTGCTGGTAGATATTTCGCT 354 Query 6281 CTGATGTCTTGGAAGCTGAGAGAGTATTTCGTGGTGACGGAGTACTTGATAAAGGAGCAT 6340 | ||||| ||| || ||| || || || | | ||||||||||| || | ||| Sbjct 355 TTAATGTCCTGGGAGACTAGATGTTACTTTGTCTTAATCGAGTACTTGATCAAACAACAT 414 Query 6341 TACGTTCCTTTATTTAATGGGCTGACAATGGCTGATGACATGACAACAGTTATATCCAAG 6400 || || || ||||||| || | || ||||| || || | | ||| | | | ||| Sbjct 415 TATGTACCACTATTTAAGGGATTAACCATGGCAGACGATTTAAATACATTAACAAAGAAG 474 Query 6401 CTGATGGATAGAACGCAGGGGCAAGG-AGGGAGTGATTATTCTCAAATCTGTATTGCAAA 6459 ||||||| | | ||| ||||| | || |||| | || ||||| ||||| Sbjct 475 ATGATGGAAACTTCTATGGGTCAAGGTATAGA-CAATTACGACTACATTTGTATAGCAAA 533 Query 6460 TCATATAGATTATGAGAAGTGGAACAATCACCAAAGAAAGGATGCCACTGGTCCAGTTTT 6519 |||| ||||||| ||| ||||| || | || ||||| || |||| | ||| || || Sbjct 534 TCATTTAGATTACTCGAAATGGAATAACAATCAGAGAAAAGAAGCCAATAATCCTGTATT 593 Query 6520 CAAAGTCATGGGTCAGTTT-TTGGGGTATCCCA-ATTTAATATAC-CGGACACATGAATT 6576 |||||| ||||| || ||| |||| | || | | || || ||| | || |||||| | Sbjct 594 CAAAGTGATGGGACAATTTCTTGGTG---CCGAGAATTTATTTACAAGAACGCATGAAAT 650 Query 6577 CTTTGAAAATAGCTGGATATACTA 6600 |||||| | || | || ||||| Sbjct 651 CTTTGAGAGGAGTTTAATCTACTA 674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35231244601168