Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_028239.1 Length=16133 Score E Sequences producing significant alignments: (Bits) Value seq121975 163 3e-36 seq34844 120 3e-23 >seq121975 Length=4353 Score = 163 bits (180), Expect = 3e-36 Identities = 346/509 (68%), Gaps = 8/509 (2%) Strand=Plus/Plus Query 11179 AATACCTACAAAAAGAGTGTTAAAAACATTGTTGGAAAAACCAGCGACAGTTTGGCCAGA 11238 || ||| ||||||| || |||| |||||| | | || || | | | | |||||||| Sbjct 192 AACACCAACAAAAAAGGTATTAACAACATTACTAGGAACCCCTGATATAATATGGCCAGA 251 Query 11239 GTTTTTGAAAAGGGTGAATGATCATGGGCTTGATTGGGAAAGTTTAGTAATTGGTCTTAA 11298 ||| |||| | | |||||| ||| | || | | | | |||| || |||| Sbjct 252 CTTTGTGAAGAAAATTAATGATGTTGGATTAGACTTGAATTCACTGATAATAGGA-TTAA 310 Query 11299 G-GCTAAAGAGAGGGAATTGAAAGATGCTGGGAGGtttttttCATTAATGAGCTGGGAGC 11357 | || ||||| | ||| ||||| |||||| || | ||| | |||||| ||||||| Sbjct 311 GAGCAAAAGAACGAGAAATGAAAATTGCTGGTAGATATTTCGCTTTAATGTCCTGGGAGA 370 Query 11358 TGAGGGAGTACTTCGTATTTACTGAATACCTAATTAAAGAGCATTTTGTACCATTATTTA 11417 || ||||| || || | || ||| | || ||| | |||| ||||||| |||||| Sbjct 371 CTAGATGTTACTTTGTCTTAATCGAGTACTTGATCAAACAACATTATGTACCACTATTTA 430 Query 11418 AGGGTCTGACTATGGCTGATGACTTACAAACAGTTATTAAGAAGATGATAGATGTGTCTT 11477 |||| | || ||||| || || ||| | ||| | | ||||||||||| || ||| Sbjct 431 AGGGATTAACCATGGCAGACGATTTAAATACATTAACAAAGAAGATGATGGAAACTTCTA 490 Query 11478 CTGGTCAAGGCACTGAGACATATGAGAATATCACCATTGCAAATAACATAGATTATGAGA 11537 |||||||| | || | || || | || || |||||| | ||||||| || Sbjct 491 TGGGTCAAGGTATAGACAATTACGACTACATTTGTATAGCAAATCATTTAGATTACTCGA 550 Query 11538 AATGGAATAATTATCAAAGGTATGAATCTAATCATGCAATATTCACAGTGATGGGGCAAT 11597 |||||||||| |||| || | ||| | ||| || | |||||| ||||||||| |||| Sbjct 551 AATGGAATAACAATCAGAGAAAAGAAGCCAATAATCCTGTATTCAAAGTGATGGGACAAT 610 Query 11598 TTTTAGGGTATCCA-AAGTTAATTGCAAGAACTCATGAGTTTTTTGAGAAAAGCCTAGTT 11656 || | ||| | | || ||| || ||||||| ||||| | ||||||| || || | Sbjct 611 TTCT-TGGTGCCGAGAATTTATTTACAAGAACGCATGAAATCTTTGAGAGGAGTTTAATC 669 Query 11657 TATTATAACCA--AAGACCTGACTTAATG 11683 || ||| ||| |||| ||| |||||| Sbjct 670 TACTAT--CCAGCAAGAGGTGATTTAATG 696 Score = 105 bits (116), Expect = 7e-19 Identities = 329/503 (65%), Gaps = 10/503 (2%) Strand=Plus/Plus Query 13171 AGGACCATATAGCCCTTATCTGGGATCAAAAACAAAAGAAAGTACAAGTATATTACAACC 13230 |||||||| | | ||| |||||||||||||| ||| ||| || |||| || Sbjct 2232 AGGACCATTTGCGGCATATTTGGGATCAAAAACATCTGAATTTACGAGCATATATAGGCC 2291 Query 13231 TTGGGAAAAAGAGTCAAACATACCAGTGATCAAAAGAGCAAGTGACTTGAGAAAAGCAAT 13290 ||||||||||||| | |||||| | || |||||||| | ||| |||| ||||| Sbjct 2292 TTGGGAAAAAGAGACCTCCATACCCATCATAAAAAGAGCTGCAAATTTGCGAAATGCAAT 2351 Query 13291 ATCATGGTTTATAGATGAAGACTCAAATTTGGCACAATCAATCT-TCAAAAACCTTGA-G 13348 | ||||||||| || | || || || || | | |||| || | ||| || || | Sbjct 2352 AGGTTGGTTTATAAATAAGGAGTCTAAATTAGGAAAATCGATTTGTCAGAA--TTTAACA 2409 Query 13349 TCCTTGACAGGAGAAGATTGGAGTGGGGTGATAGAAGGATATAAAAGAACTGGAAGTGCA 13408 || || |||||||||||||| | | ||| | | ||||||||| || Sbjct 2410 TCTTTAACAGGAGAAGATTGTTCTAAGTCCATATCCAGTTTCTCAAGAACTGGTTCAGCC 2469 Query 13409 TTACATAGATTCTCTTGTTCAAGGATAAGCTCTGGGGGGTACACAGCTAATGCGCCTGGA 13468 ||||||||||||| ||||| | |||| | || || || ||||| | |||| | Sbjct 2470 CTACATAGATTCTCATGTTCTCGACAAAGCGCAGGAGGATATGCAGCTCAAAGTCCTGTA 2529 Query 13469 AAAATCTGCTGGACAATAACAACAACAGATACTATGAATGATTTGGGTGACAATAATTAT 13528 ||| | | | || | || || |||||| | | || ||| ||| || |||||| Sbjct 2530 AAACTAACGAGAATGATTTCTACCACCGATACTTTAGAAGAATTGAATGATAAAAATTAT 2589 Query 13529 GACTTTATGTATCAGTCTTCCATGATTTACTGTCAAAT--GCAGTGTTTAGAGAC-TGTT 13585 ||||| |||| ||| ||| | || || | |||||| | || | || || | Sbjct 2590 GACTTCATGTTCCAGACTTTGCTAATCTAATCTCAAATTACAACTGGGGAATTACATGCT 2649 Query 13586 GGGGAAACAGAAGTATCTGTGGCATGTCATTATCACATAAAATGCAAAGATTGTTTAAGA 13645 ||||| | | |||| | ||||| |||||| | ||| || ||| ||||| Sbjct 2650 AACAAAACAAATGCTACTGT---CTATCATTTTCACATTACATGTTTAGGATGTCTAAGA 2706 Query 13646 GAAATCGAAGAACCAATATTGGA 13668 ||||| |||| |||||||| || Sbjct 2707 GAAATTAAAGATCCAATATTAGA 2729 >seq34844 Length=5462 Score = 120 bits (132), Expect = 3e-23 Identities = 360/543 (66%), Gaps = 26/543 (5%) Strand=Plus/Minus Query 11528 GATTATGAGAAATGGAATAATTATCAAAGGTATGAATCTAATCATGCAATATTCACAGTG 11587 |||||| || ||||||||| |||| ||| | ||| | || | || | |||| ||| Sbjct 4556 GATTATTCTAAGTGGAATAATAATCAGAGGAAAGAAGCAAACAACCCAGTTTTCAAAGTC 4497 Query 11588 ATGGGGCAATTTTTAGGGTATCCAAAGTTAATTGCAAGAACTCATGAGTTTTTTGAGAAA 11647 ||||| |||||| | || || || || || | |||||||||||| |||| || || Sbjct 4496 ATGGGACAATTTATGGGAGCACCCAATTTGTTTACGAGAACTCATGAGATTTTCGAAAAT 4437 Query 11648 AGCCTAGTTTATTATAACCAAAGACCTGACTTAATGAGAGTA-GTAGGGAATGAAGT--- 11703 || || |||||||| || ||| ||||||| |||| ||| ||| |||| Sbjct 4436 AGTTTAATTTATTATCCTGCTAGGGGTGATTTAATGACAGTACGTA-ACAATCAAGTTGT 4378 Query 11704 -AATAAGCTCCAATTCTAGAAAGGTAGCATGGGAAGGTCAGAAAGGTGGACTGGAGGGAT 11762 ||||| | || || | || | || ||| | ||||||| || ||| |||| ||| Sbjct 4377 CAATAA--TTCAGACCT-GCGAGTTTGC-TGGCAGGGTCAGAGTGGAGGAATGGAAGGAC 4322 Query 11763 TAAGGCAGAAAGGGTGGAGTGTGGTGAATC-TA---TTAAT---GATAGAGAGAGAAGTA 11815 |||| || ||||||| |||| |||| || ||| | || | |||||| || Sbjct 4321 TAAGACA-AAAGGGT------TGGTCAATCGTAGGGTTACTTTCCATCAACAGAGAAATA 4269 Query 11816 AAAATAAGAAACACGTTAGTTAAGGTCTTAGCCCAGGGTGATAATCAAACAATAACAACA 11875 | | ||||||| ||||| || || ||||| ||||| || || ||| |||| || Sbjct 4268 TTACAACGAAACACATTAGTAAAAGTATTAGCTCAGGGAGACAACCAAGTAATATGCAC- 4210 Query 11876 CAT-TATAAAACAGAAACATTTCATCAAGAGAATGAATTGATGGAGCATATAAAAAATAT 11934 ||| ||||| | | || | | | | | || | || || ||| | | || ||||||| Sbjct 4209 CATGTATAAGATACAATCCTATTCTGATGATAGCGAGTTAATGAAAAACATCGAAAATAT 4150 Query 11935 AGTTAGTAATAATAATGCAATCATGGAAAGTATAATAATAGGGACAAGAAAGCTAGGGCT 11994 | | | |||||| | || |||||| || ||| || ||| || ||| || ||| | Sbjct 4149 AATAAAAAATAATGAAGCTATCATGAAAGCTATTGAAAGAGGAGCAGAAAAACTTGGGTT 4090 Query 11995 AAGGATAAATGAAGACGAGACAATGCAGTCACCGGATTATATAAACTATGGAAAGGTGCC 12054 ||||||||||| || ||||| || | |||||| | || || || || || || Sbjct 4089 GGAAATAAATGAAGATGAAACAATTCAAAGTGCCGATTATCTTAATTACGGTAAAGTTCC 4030 Query 12055 GAT 12057 || Sbjct 4029 CAT 4027 Score = 98.7 bits (108), Expect = 1e-16 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 13171 AGGACCATATAGCCCTTATCTGGGATCAAAAACAAAAGAAAGTACAAGTATATTACAA-C 13229 |||||| | | | |||| || ||||| ||||| ||| ||| ||||||| ||| | Sbjct 2919 AGGACCGTTTGCCGCTTACCTCGGATCTAAAACCTCTGAATTTACTAGTATAT-ACAGGC 2861 Query 13230 CTTGGGAAAAAGAGTCAAACATACCAGTGATCAAAAGAGCAAGTGACTTGAGAAAAGCAA 13289 | |||||||||||| | || || | |||||| | ||| | || ||||| |||| Sbjct 2860 CATGGGAAAAAGAGACTTCAATTCCTCTAATCAAACGGGCAGCTAGTTTAAGAAATGCAA 2801 Query 13290 TATCATGGTTTATAGATGAAGACTCAAATTTGGCACAATCAATCTTCAAAAACCTTGAGT 13349 || |||||| || || |||| |||||||| | | | ||||||| | |||| || || | Sbjct 2800 TAGGATGGTTCATCAATAAAGAGTCAAATTTAGGAAATTCAATCTGCCAAAATCTAGAAT 2741 Query 13350 CCTTGACAGGAGAAGA 13365 | || ||||||||||| Sbjct 2740 CATTAACAGGAGAAGA 2725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 51381349738016