Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_028241.1 Length=14478 Score E Sequences producing significant alignments: (Bits) Value seq34844 100 3e-17 seq121975 91.5 1e-14 >seq34844 Length=5462 Score = 100 bits (110), Expect = 3e-17 Identities = 224/331 (68%), Gaps = 8/331 (2%) Strand=Plus/Minus Query 9886 AAATGGAATAATTATCAGAGAATGGAATCAAACGGTCCTGTATTCAGAGTAATGGGTCAA 9945 || ||||||||| ||||||| | ||| ||||| || || |||| ||| ||||| ||| Sbjct 4547 AAGTGGAATAATAATCAGAGGAAAGAAGCAAACAACCCAGTTTTCAAAGTCATGGGACAA 4488 Query 9946 TTCTTGGGATATCCTAATTTGATACTCAGGACCCATGAGTTTTTTCAGAAAAGTTTAATT 10005 || ||||| || |||||| | || || |||||| |||| | || ||||||||| Sbjct 4487 TTTATGGGAGCACCCAATTTGTTTACGAGAACTCATGAGATTTTCGAAAATAGTTTAATT 4428 Query 10006 TATTATAATCAAAGACCTGATTTGATGAGAGTAGTTGGGAA--AAGTGCTATGAACAGTA 10063 |||||| | || |||||| |||| |||| | || |||| | | || | | Sbjct 4427 TATTATCCTGCTAGGGGTGATTTAATGACAGTACGTAACAATCAAGT--TGTCAATAATT 4370 Query 10064 CTAAACATATCGTGTGCTGGGAAGGGCAGCTGGGTGGTTTAGAAGGGCTGAGACAAAAGG 10123 | | | || |||||| | || ||| || || | ||||| || |||||||||| Sbjct 4369 CAGACCTGCGAGTTTGCTGGCAGGGTCAGAGTGGAGGAATGGAAGGACTAAGACAAAAGG 4310 Query 10124 GGTGGAGTGTTGT-CAATTATTTAATGATTGAAC-GAGAATCTAAAGTAAGAAACACCTT 10181 | ||| | || ||| || | | ||| ||||| | | ||||||| || Sbjct 4309 GTTGGTCAATCGTAGGGTTACTT--TCCATCAACAGAGAAATATTACAACGAAACACATT 4252 Query 10182 AGTGAAAGTGTTGGCTCAGGGAGACAACCAA 10212 ||| ||||| || |||||||||||||||||| Sbjct 4251 AGTAAAAGTATTAGCTCAGGGAGACAACCAA 4221 >seq121975 Length=4353 Score = 91.5 bits (100), Expect = 1e-14 Identities = 288/441 (65%), Gaps = 8/441 (2%) Strand=Plus/Plus Query 9652 AAAGAGAGGGAATTGAAAGAAGCCGGACGATTCTTTTCCTTAATGTCCTGGGAATTAAGG 9711 ||||| | ||| ||||| || || ||| || | |||||||||||||| || Sbjct 316 AAAGAACGAGAAATGAAAATTGCTGGTAGATATTTCGCTTTAATGTCCTGGGAGACTAGA 375 Query 9712 GAATATTTCGTTGTAACTGAATTACTGATTAAACAACATTATGTAAAGTTGTTCAAAGGT 9771 || || || ||| || | |||| ||||||||||||||| | || || || Sbjct 376 TGTTACTTTGTCTTAATCGAGTACTTGATCAAACAACATTATGTACCACTATTTAAGGGA 435 Query 9772 TTGACCATGGCAGATGATCTCCAAACTGTCATAAAGAAAATGCTTGATACCTCACATGGT 9831 || ||||||||||| ||| | | || | | |||||| ||| | || || || ||| Sbjct 436 TTAACCATGGCAGACGATTTAAATACATTAACAAAGAAGATGATGGAAACTTCTATGGGT 495 Query 9832 CAGGGAACCCGTACATATGATGCCATCACCATTGCCAATAACATAGACTATGAAAAATGG 9891 || || | | || || ||| || || ||| | |||| || |||||| Sbjct 496 CAAGGTATAGACAATTACGACTACATTTGTATAGCAAATCATTTAGATTACTCGAAATGG 555 Query 9892 AATAATTATCAGAGAATGGAATCAAACGGTCCTGTATTCAGAGTAATGGGTCAA-TTCTT 9950 ||||| ||||||||| ||| | || ||||||||||| ||| ||||| ||| ||||| Sbjct 556 AATAACAATCAGAGAAAAGAAGCCAATAATCCTGTATTCAAAGTGATGGGACAATTTCTT 615 Query 9951 GGGATATC-CTAATTTGATACTCAGGACCCATGAGTTTTTTCAGAAAAGTTTAATTTATT 10009 || | | ||||| | || || ||||| | ||| ||| |||||||| || | Sbjct 616 GG--TGCCGAGAATTTATTTACAAGAACGCATGAAATCTTTGAGAGGAGTTTAATCTACT 673 Query 10010 ATAATCAAAGACCTGATTTGATGAGAGTAGTTG--GGAAAAGTGCTATGAACAGTACTAA 10067 || |||| |||||| ||| || || | ||||| | | |||| | | | Sbjct 674 ATCCAGCAAGAGGTGATTTAATGTCTGTGCGTGAAGCCAAAGT--TGTAAACAACAGTGA 731 Query 10068 ACATATCGTGTGCTGGGAAGG 10088 |||||| || |||||||| || Sbjct 732 ACATATTGTATGCTGGGATGG 752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46098289734511