Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_031215.1 Length=12291 Score E Sequences producing significant alignments: (Bits) Value seq121975 158 9e-35 >seq121975 Length=4353 Score = 158 bits (174), Expect = 9e-35 Identities = 437/664 (66%), Gaps = 16/664 (2%) Strand=Plus/Plus Query 7053 AATAGACGATTTCGGAGATCACTGGCATGAGCTACCTTTGA-TCAAGTGTTTTGAAATTC 7111 |||||| ||| | |||||| ||||||| |||||| | | |||| ||||| || |||| Sbjct 46 AATAGAAGATATGGGAGATGTCTGGCATCTACTACCTCTAACTCAA-TGTTTCGAGATTC 104 Query 7112 CGGACATGTTTGATCCTTC-GACGCTGTATGCAGATAAAAGTCATTCCATGAACAAAGAT 7170 | || || |||| || | ||| || | | | || ||||||||||| ||| || |||| Sbjct 105 CAGATGTGATTGACCCGGCTGAC-CTTTTTTCGGACAAAAGTCATTCTATGGACCTAGAT 163 Query 7171 GAGGTTATTGATTTCATGAAGAAGAATCCAGATCGTCCTATTCCATCAAAAAAGGTATTA 7230 | |||| | || |||| | ||| |||||||||||||| Sbjct 164 AACA----------CATGCGCAGCAAGCCAGGCACCAGAACACCAACAAAAAAGGTATTA 213 Query 7231 TATACTCTTCTTATGAAGCCCGCGCGAAAT-TGGCCAGCCTTTCTGAAACAAATAGATGA 7289 || | || | ||| ||| ||| ||||||| |||| |||| |||| |||| Sbjct 214 ACAACATTACT-AGGAACCCCTGATATAATATGGCCAGACTTTGTGAAGAAAATTAATGA 272 Query 7290 GGAGGGGCTGGATCTCAATGCTCTGATTATCGGGTTGAAAGAGAAGGAGAGAGAGATCAA 7349 | || | || | ||| | ||||| || || || | || || || |||| || || Sbjct 273 TGTTGGATTAGACTTGAATTCACTGATAATAGGATTAAGAGCAAAAGAACGAGAAATGAA 332 Query 7350 AATTAACGGTCGTTTTTTCTCTCTGATGTCATGGGATTTGAGAGATTACTTTGTGATAAC 7409 |||| ||| | | |||| || | ||||| ||||| ||| ||||||||| ||| Sbjct 333 AATTGCTGGTAGATATTTCGCTTTAATGTCCTGGGAGACTAGATGTTACTTTGTCTTAAT 392 Query 7410 TGAATATCTAATCAAGACACATTTTGTCCCTCTTTTCTATGGTCTAACTATGGCCGATGA 7469 || || | ||||| ||||| ||| || || || | || |||| ||||| || || Sbjct 393 CGAGTACTTGATCAAACAACATTATGTACCACTATTTAAGGGATTAACCATGGCAGACGA 452 Query 7470 TATGACGACCGTTGTGAGGAAGATGATGGAGAATACTAGCGGTCAGGGCTCTGATGATTA 7529 | | | || | | |||||||||||| | | ||| ||||| || || |||| Sbjct 453 TTTAAATACATTAACAAAGAAGATGATGGAAACTTCTATGGGTCAAGGTATAGACAATTA 512 Query 7530 TGAACACATCGGAATTGCAAACCACCTTGATTACGAAAAATGGAACAACCATCAGAGATA 7589 || |||| | || ||||| || | |||||| |||||||| ||| |||||||| | Sbjct 513 CGACTACATTTGTATAGCAAATCATTTAGATTACTCGAAATGGAATAACAATCAGAGAAA 572 Query 7590 TCAGTCCACTGAGCCGGTATTTACGGTGATGGGAAAGTTTTTGGGTTATCCTAATTTGAT 7649 | ||| | | || ||||| | ||||||||| | ||| | ||| ||||| | Sbjct 573 AGAAGCCAATAATCCTGTATTCAAAGTGATGGGACAATTTCTTGGTGCCGAGAATTTATT 632 Query 7650 TGCCAGGACCCATGAGTTCTTTGAAAAGAGTTTTATCTATCACGGAGGCAGAGCAGATTT 7709 | | || || ||||| ||||||| | |||||| ||||| | || |||| ||||| Sbjct 633 TACAAGAACGCATGAAATCTTTGAGAGGAGTTTAATCTACTATCCAGCAAGAGGTGATTT 692 Query 7710 AATG 7713 |||| Sbjct 693 AATG 696 Score = 141 bits (156), Expect = 7e-30 Identities = 263/380 (69%), Gaps = 6/380 (2%) Strand=Plus/Plus Query 9190 AGAGGCCCTTATGCAGCCTATCTAGGATCATCAACAAACGAATCCACTAGTATCCTTCGA 9249 ||||| || | ||| || ||| | |||||| |||| |||| || || || | | Sbjct 2230 AGAGGACCATTTGCGGCATATTTGGGATCAAAAACATCTGAATTTACGAGCATATATAGG 2289 Query 9250 CCTTGGGAAAAAGAGACCAACATTCCCATGCTTACAAGGGCCTCTAACCTAAGAAAATCG 9309 |||||||||||||||||| ||| ||||| | | ||| || | || | |||| | Sbjct 2290 CCTTGGGAAAAAGAGACCTCCATACCCATCATAAAAAGAGCTGCAAATTTGCGAAATGCA 2349 Query 9310 ATAGGTTGGTTTGTGTCTCCAGAGTCTAACTTGGCAGAATCTATTTATCAGAATCTT-CA 9368 |||||||||||| | | |||||||| || | | |||| |||| ||||||| | || Sbjct 2350 ATAGGTTGGTTTATAAATAAGGAGTCTAAATTAGGAAAATCGATTTGTCAGAATTTAACA 2409 Query 9369 TGCCCTGACCGGAGAGGATTGGGATAGAGT--ATCGGCGAATTTTAAAAGAACGGGGTCT 9426 | | | || ||||| ||||| || ||| || | | ||| |||||| || || Sbjct 2410 T-CTTTAACAGGAGAAGATTGTTCTA-AGTCCATATCC-AGTTTCTCAAGAACTGGTTCA 2466 Query 9427 GCACTTCACAGATTCAGATGCTCCAGACAAAGTTCAGGAGGATATGCCGCACAGAGTCCG 9486 || || || |||||| ||| || ||||||| ||||||||||||| || || ||||| Sbjct 2467 GCCCTACATAGATTCTCATGTTCTCGACAAAGCGCAGGAGGATATGCAGCTCAAAGTCCT 2526 Query 9487 GTTAAACTAACTCGCATATCTACAACCACCAGCACCTTACAAGACTTGGGCGATCAGAAC 9546 || |||||||| | || | | |||||| || ||| |||| ||| ||| | || Sbjct 2527 GTAAAACTAACGAGAATGATTTCTACCACCGATACTTTAGAAGAATTGAATGATAAAAAT 2586 Query 9547 TACGACTTTATGTTTCAAAC 9566 || ||||| ||||| || || Sbjct 2587 TATGACTTCATGTTCCAGAC 2606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39122771165940