Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_031240.1 Length=11541 Score E Sequences producing significant alignments: (Bits) Value seq121975 150 1e-32 seq34844 100 2e-17 >seq121975 Length=4353 Score = 150 bits (166), Expect = 1e-32 Identities = 281/403 (70%), Gaps = 16/403 (4%) Strand=Plus/Plus Query 6409 AATAAATGATTTTGGGATCTCAATTGAA--CATTTAGTGATTGGTTTAAAAGAGAAAGAA 6466 ||| |||||| |||| || | ||||| || | | | || || |||| || |||||| Sbjct 264 AATTAATGATGTTGG-ATTAGACTTGAATTCACTGA-TAATAGGATTAAGAGCAAAAGAA 321 Query 6467 AGAGAGTTGAAGATAGGAGGAAGATTTTTCGCTTTAATGTCTTGGGAGATTAGAGATTAT 6526 |||| |||| || | || |||| ||||||||||||||| ||||||| |||| ||| Sbjct 322 CGAGAAATGAAAATTGCTGGTAGATATTTCGCTTTAATGTCCTGGGAGACTAGATGTTAC 381 Query 6527 TTTGTAATGACAGAATATTTAATTAAAACTCATTTTGTGCCTCTCTTTGACGGATTAACA 6586 ||||| | | || || || || ||| |||| ||| || || ||| | |||||||| Sbjct 382 TTTGTCTTAATCGAGTACTTGATCAAACAACATTATGTACCACTATTTAAGGGATTAACC 441 Query 6587 ATGGCTGATGATCTAACAACTGTTATCGGA-AAGATTTTGCGAAAC-ACTGAAGGACAAG 6644 ||||| || ||| ||| || ||| | | ||||| || ||||| || || |||| Sbjct 442 ATGGCAGACGATTTAAATAC-ATTAACAAAGAAGATGATG-GAAACTTCTATGGGTCAAG 499 Query 6645 GAGAAGATGGATATGA----AAGTGTCACCTTCGCAGATCATATAGATTACGAAAAATGG 6700 | ||| || || | ||| | ||| ||||| |||||||| |||||| Sbjct 500 GTATAGACAATTACGACTACATTTGT----ATAGCAAATCATTTAGATTACTCGAAATGG 555 Query 6701 AACAATCATCAGAGAGGAGAGGCAAATAATCCAACTTTCAAAGTTATGGGACAATTTTTA 6760 || || |||||||| ||| || |||||||| |||||||| |||||||||||| | Sbjct 556 AATAACAATCAGAGAAAAGAAGCCAATAATCCTGTATTCAAAGTGATGGGACAATTTCTT 615 Query 6761 GGATACCCCAATTTAATTCAGAGAACTCATGAAATATTTGAGA 6803 || | |||||| || ||||| |||||||| ||||||| Sbjct 616 GGTGCCGAGAATTTATTTACAAGAACGCATGAAATCTTTGAGA 658 Score = 93.3 bits (102), Expect = 3e-15 Identities = 245/369 (66%), Gaps = 10/369 (3%) Strand=Plus/Plus Query 8342 GCATATTTAGGCTCATCAACCCTTGAATCAACTAGCATTTTACAGCACTGGGAAAAAGAG 8401 |||||||| || ||| ||| ||||| || ||||| | || |||||||||||| Sbjct 2245 GCATATTTGGGATCAAAAACATCTGAATTTACGAGCATATATAGGCCTTGGGAAAAAGAG 2304 Query 8402 ACTAAAGTTCCTTTATTGAGACGAGCAGCAAATTTAAGGAATTCTATCGGATGGTTCATT 8461 || | || | | | | |||| |||||||| | ||| | || || ||||| || Sbjct 2305 ACCTCCATACCCATCATAAAAAGAGCTGCAAATTTGCGAAATGCAATAGGTTGGTTTATA 2364 Query 8462 CAGCCCGGATCTGCACTGGCACAAAGCATATTAAACAATCTAAGATCATTAACAGGTGAA 8521 | | ||| | | | | || || | | ||| ||| ||| |||||||| ||| Sbjct 2365 AATAAGGAGTCTAAATTAGGAAAATCGATTTGTCAGAATTTAACATCTTTAACAGGAGAA 2424 Query 8522 GACTGGGGTGAA--CATATCAGAGAATTTAAAAGAACAGGATCAGCATTACATCGATTTA 8579 || || | | |||||| || | | || |||| || ||||| ||||| |||| Sbjct 2425 GATTGTTCTAAGTCCATATCC-AGTTTCTCAA-GAACTGGTTCAGCCCTACATAGATTCT 2482 Query 8580 GTTGTTCAAGGCAAAGTAGTGGAGGTTATGCAGCTCAAAATCCTTCCAAACTAACTCGAA 8639 ||||| | ||||| ||||| ||||||||||||| |||| |||||||| ||| Sbjct 2483 CATGTTCTCGACAAAGCGCAGGAGGATATGCAGCTCAAAGTCCTGTAAAACTAACGAGAA 2542 Query 8640 TGATATCCACTACAAATTCATTTGCAGATCTGGGGAATGTT---AATTATGACTTTATGT 8696 |||| || || || || | || | ||| | ||||| | ||||||||||| |||| Sbjct 2543 TGATTTCTACCACCGATACTTTAGAAGAATT---GAATGATAAAAATTATGACTTCATGT 2599 Query 8697 ACCAGAGTT 8705 ||||| || Sbjct 2600 TCCAGACTT 2608 >seq34844 Length=5462 Score = 100 bits (110), Expect = 2e-17 Identities = 588/924 (64%), Gaps = 42/924 (5%) Strand=Plus/Minus Query 6695 AAATGGAACAATCATCAGAGAGGAGAGGCAAATAATCCAACTTTCAAAGTTATGGGACAA 6754 || ||||| ||| ||||||| ||| ||||| || ||| ||||||||| ||||||||| Sbjct 4547 AAGTGGAATAATAATCAGAGGAAAGAAGCAAACAACCCAGTTTTCAAAGTCATGGGACAA 4488 Query 6755 TTTTTAGGATACCCCAATTTAATTCAGAGAACTCATGAAATATTTGAGAAATCATGGATA 6814 ||| | ||| |||||||| || |||||||||||| || || || || | || Sbjct 4487 TTTATGGGAGCACCCAATTTGTTTACGAGAACTCATGAGATTTTCGAAAATAGTTTAATT 4428 Query 6815 TATTATAATCGAAGGGGAGACTTATTGGGCATCGACGATAATGACAACCTTTTCAATAAA 6874 |||||| | ||||| || ||| | | || ||| ||| | | || ||||||| Sbjct 4427 TATTATCCTGCTAGGGGTGATTTAAT-GACA-GTACG-TAACAATCAAGTTGTCAATAAT 4371 Query 6875 GGGCAACACAGAGTTTGTTGGAATGGGCAAGCCGGCGGACTTGAAGGACTCAGGCAAAAA 6934 | | ||||||| ||| | || || || ||| | |||||||| || ||||| Sbjct 4370 TCAGACCTGCGAGTTTGCTGGCAGGGTCAGAGTGGAGGAATGGAAGGACTAAGACAAAAG 4311 Query 6935 GGGTGGAGTATAGTA-AATCTCTTAATTCTTAAACGGGAGAGCAGAACTGTTAATAC--- 6990 || ||| || ||| | ||| | | | ||| | |||| | ||| || Sbjct 4310 GGTTGGTCAATCGTAGGGTTACTT--TCCATCAACAG------AGAAATATTACAACGAA 4259 Query 6991 CGACATT----AAGGTCTTAGCGCAAGGAGATAACCAAGTAATTTGCTCTCGATACAAAC 7046 ||||| || || ||||| || ||||| ||||||||||| ||| | || || Sbjct 4258 ACACATTAGTAAAAGTATTAGCTCAGGGAGACAACCAAGTAATATGCACCATGTATAA-- 4201 Query 7047 TGAGAAAA----AGTCGAAATCCAGACCAATTATATAACAACCTCATGGATATTAGTAAG 7102 || | || | || | || | | ||| || ||| || |||| | || Sbjct 4200 -GATACAATCCTATTCTGATGATAG-CGAGTTAATGAAAAACATCGAAAATATAATAAAA 4143 Query 7103 AACAATAAAGCTCTAATGGATAGAATTGCGGAAGGAACAGGGAAATTAGGACTAATTATT 7162 || ||| ||||| | ||| | |||| |||| ||| ||| | || | || Sbjct 4142 AATAATGAAGCTATCATGAAAGCTATTGAAAGAGGAGCAGAAAAACTTGGGTTGGAAATA 4083 Query 7163 AATCACGATGAGACCATGAAAAGCACGGAATTTCTGAATTATGGAAAAACCTGTGTCTTT 7222 ||| | ||||| || || |||| | || | ||| ||||| || ||| | || Sbjct 4082 AATGAAGATGAAACAATTCAAAGTGCCGATTATCTTAATTACGGTAAAGTTCCCATAATT 4023 Query 7223 AGGGGTAATATT-AGGAATCTGGAAACAAAGAGATGGTCTCGGGTAACTTGTGTAACAAA 7281 ||||| || ||| | | |||| ||| |||||||||||||||| || || | | || Sbjct 4022 AGGGGAAACATTCATGTATCT-GAATCAAAGAGATGGTCTCGACTAGCTACATTGTCTAA 3964 Query 7282 TGATCAATTACCGACGATGGCTAATGTCTTATCAACAACTTCCAGCAATGCACTGACTGT 7341 ||| || || || || | || ||| | |||||| || || || || | || | ||| Sbjct 3963 TGACCAGTTGCCTACCCTAGCAAATATATTATCATCAGTCTCTAGTAACTCTCTAAATGT 3904 Query 7342 CTCTCATTTTTCTGACTCTCCTATAAATTCTATTATTTTATATAACTTCTATGG--ACAT 7399 ||||||||||| || || |||||| |||| ||| | || || |||| Sbjct 3903 ATCTCATTTTTCGGAGAGCCCAATAAATGCTATGTACCACTATGATTTAGCGGGAAACAT 3844 Query 7400 TTTGTTCGAATTATTTGTGAAAAGCACAATCCAGCAATCAGAGGCCCCTTACATTCAATC 7459 || | || || |||| | |||| |||| ||||| ||||| || | ||||| | Sbjct 3843 GGTGATTGAGTT-GTTGT-CCAGGCACGATCCCGCAATTAGAGGACCGATCCATTCTGTA 3786 Query 7460 CTAAA---AATTTCAGAGATTAAGTATATGTATGATCTTTACTACTTGATATCTTCTTTA 7516 | || || | ||| | || ||| || ||||| | ||| | || Sbjct 3785 ATGAATCGAACT--AGAAGTGAA--ATAACTAGCCCGTTTAC--CAGAATACCCCTATTG 3732 Query 7517 TATTTGGATCCCTCTATTGGTGGTGTTTCCGGTATGTCTTTAACAAGATTCTTAATCAGA 7576 ||||| |||||||| | || || ||||| |||| | | | ||||| ||||||||| Sbjct 3731 TATTTAGATCCCTCCTTAGGAGGATCCTCCGGGATGTGTCTTAGCAGATTTTTAATCAGA 3672 Query 7577 GTCTTCCCCGATCCAATCACTGAA 7600 | ||||| |||||||| |||||| Sbjct 3671 ATGTTCCCGGATCCAATAACTGAA 3648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36728476724940